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: MIABIS Collection Sample Type Code System - JSON Representation

Active as of 2025-05-15

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{
  "resourceType" : "CodeSystem",
  "id" : "miabis-collection-sample-type-cs",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem miabis-collection-sample-type-cs</b></p><a name=\"miabis-collection-sample-type-cs\"> </a><a name=\"hcmiabis-collection-sample-type-cs\"> </a><a name=\"miabis-collection-sample-type-cs-en-US\"> </a><p>This  code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">Blood<a name=\"miabis-collection-sample-type-cs-Blood\"> </a></td><td>Blood</td></tr><tr><td style=\"white-space:nowrap\">BuffyCoat<a name=\"miabis-collection-sample-type-cs-BuffyCoat\"> </a></td><td>Buffy Coat</td></tr><tr><td style=\"white-space:nowrap\">CancerCellLine<a name=\"miabis-collection-sample-type-cs-CancerCellLine\"> </a></td><td>Cancer Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">DNA<a name=\"miabis-collection-sample-type-cs-DNA\"> </a></td><td>DNA</td></tr><tr><td style=\"white-space:nowrap\">EntireOrgan<a name=\"miabis-collection-sample-type-cs-EntireOrgan\"> </a></td><td>Entire Organ</td></tr><tr><td style=\"white-space:nowrap\">Faeces<a name=\"miabis-collection-sample-type-cs-Faeces\"> </a></td><td>Faeces</td></tr><tr><td style=\"white-space:nowrap\">EmbryoFetal<a name=\"miabis-collection-sample-type-cs-EmbryoFetal\"> </a></td><td>Embryo or Fetal tissue</td></tr><tr><td style=\"white-space:nowrap\">ImmortalizedCellLine<a name=\"miabis-collection-sample-type-cs-ImmortalizedCellLine\"> </a></td><td>Immortalized Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">IsolatedMicrobe<a name=\"miabis-collection-sample-type-cs-IsolatedMicrobe\"> </a></td><td>Isolated Microbes</td></tr><tr><td style=\"white-space:nowrap\">OtherBodyFluid<a name=\"miabis-collection-sample-type-cs-OtherBodyFluid\"> </a></td><td>Other Body Fluid</td></tr><tr><td style=\"white-space:nowrap\">Plasma<a name=\"miabis-collection-sample-type-cs-Plasma\"> </a></td><td>Plasma</td></tr><tr><td style=\"white-space:nowrap\">PrimaryCells<a name=\"miabis-collection-sample-type-cs-PrimaryCells\"> </a></td><td>Primary Cells</td></tr><tr><td style=\"white-space:nowrap\">PostMortemTissue<a name=\"miabis-collection-sample-type-cs-PostMortemTissue\"> </a></td><td>Post-Mortem Tissue</td></tr><tr><td style=\"white-space:nowrap\">RNA<a name=\"miabis-collection-sample-type-cs-RNA\"> </a></td><td>RNA</td></tr><tr><td style=\"white-space:nowrap\">Saliva<a name=\"miabis-collection-sample-type-cs-Saliva\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">Serum<a name=\"miabis-collection-sample-type-cs-Serum\"> </a></td><td>Serum</td></tr><tr><td style=\"white-space:nowrap\">SpecimenEnvironment<a name=\"miabis-collection-sample-type-cs-SpecimenEnvironment\"> </a></td><td>Specimen from Environment or from food</td></tr><tr><td style=\"white-space:nowrap\">Swab<a name=\"miabis-collection-sample-type-cs-Swab\"> </a></td><td>Swab</td></tr><tr><td style=\"white-space:nowrap\">TissueFrozen<a name=\"miabis-collection-sample-type-cs-TissueFrozen\"> </a></td><td>Tissue (frozen)</td></tr><tr><td style=\"white-space:nowrap\">TissueFFPE<a name=\"miabis-collection-sample-type-cs-TissueFFPE\"> </a></td><td>Tissue (FFPE)</td></tr><tr><td style=\"white-space:nowrap\">Urine<a name=\"miabis-collection-sample-type-cs-Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">Other<a name=\"miabis-collection-sample-type-cs-Other\"> </a></td><td>Other</td></tr></table></div>"
  },
  "url" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs",
  "version" : "1.0.0",
  "name" : "CollectionSampleTypeCS",
  "title" : "MIABIS Collection Sample Type Code System",
  "status" : "active",
  "date" : "2025-05-15T13:14:34+00:00",
  "publisher" : "BBMRI-ERIC",
  "contact" : [
    {
      "name" : "BBMRI-ERIC",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://bbmri-eric.eu"
        },
        {
          "system" : "email",
          "value" : "contact@bbmri-eric.eu"
        }
      ]
    },
    {
      "name" : "Radovan Tomasik",
      "telecom" : [
        {
          "system" : "email",
          "value" : "radovan.tomasik@bbmri-eric.eu",
          "use" : "work"
        }
      ]
    }
  ],
  "description" : "Codes for the collection sample types of the provided samples",
  "content" : "complete",
  "count" : 22,
  "concept" : [
    {
      "code" : "Blood",
      "display" : "Blood"
    },
    {
      "code" : "BuffyCoat",
      "display" : "Buffy Coat"
    },
    {
      "code" : "CancerCellLine",
      "display" : "Cancer Cell Lines"
    },
    {
      "code" : "DNA",
      "display" : "DNA"
    },
    {
      "code" : "EntireOrgan",
      "display" : "Entire Organ"
    },
    {
      "code" : "Faeces",
      "display" : "Faeces"
    },
    {
      "code" : "EmbryoFetal",
      "display" : "Embryo or Fetal tissue"
    },
    {
      "code" : "ImmortalizedCellLine",
      "display" : "Immortalized Cell Lines"
    },
    {
      "code" : "IsolatedMicrobe",
      "display" : "Isolated Microbes"
    },
    {
      "code" : "OtherBodyFluid",
      "display" : "Other Body Fluid"
    },
    {
      "code" : "Plasma",
      "display" : "Plasma"
    },
    {
      "code" : "PrimaryCells",
      "display" : "Primary Cells"
    },
    {
      "code" : "PostMortemTissue",
      "display" : "Post-Mortem Tissue"
    },
    {
      "code" : "RNA",
      "display" : "RNA"
    },
    {
      "code" : "Saliva",
      "display" : "Saliva"
    },
    {
      "code" : "Serum",
      "display" : "Serum"
    },
    {
      "code" : "SpecimenEnvironment",
      "display" : "Specimen from Environment or from food"
    },
    {
      "code" : "Swab",
      "display" : "Swab"
    },
    {
      "code" : "TissueFrozen",
      "display" : "Tissue (frozen)"
    },
    {
      "code" : "TissueFFPE",
      "display" : "Tissue (FFPE)"
    },
    {
      "code" : "Urine",
      "display" : "Urine"
    },
    {
      "code" : "Other",
      "display" : "Other"
    }
  ]
}