MIABIS on FHIR Implementation Guide
1.0.0 - CI Build

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: MIABIS Collection Sample Type Code System - TTL Representation

Active as of 2025-05-15

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "miabis-collection-sample-type-cs"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem miabis-collection-sample-type-cs</b></p><a name=\"miabis-collection-sample-type-cs\"> </a><a name=\"hcmiabis-collection-sample-type-cs\"> </a><a name=\"miabis-collection-sample-type-cs-en-US\"> </a><p>This  code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">Blood<a name=\"miabis-collection-sample-type-cs-Blood\"> </a></td><td>Blood</td></tr><tr><td style=\"white-space:nowrap\">BuffyCoat<a name=\"miabis-collection-sample-type-cs-BuffyCoat\"> </a></td><td>Buffy Coat</td></tr><tr><td style=\"white-space:nowrap\">CancerCellLine<a name=\"miabis-collection-sample-type-cs-CancerCellLine\"> </a></td><td>Cancer Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">DNA<a name=\"miabis-collection-sample-type-cs-DNA\"> </a></td><td>DNA</td></tr><tr><td style=\"white-space:nowrap\">EntireOrgan<a name=\"miabis-collection-sample-type-cs-EntireOrgan\"> </a></td><td>Entire Organ</td></tr><tr><td style=\"white-space:nowrap\">Faeces<a name=\"miabis-collection-sample-type-cs-Faeces\"> </a></td><td>Faeces</td></tr><tr><td style=\"white-space:nowrap\">EmbryoFetal<a name=\"miabis-collection-sample-type-cs-EmbryoFetal\"> </a></td><td>Embryo or Fetal tissue</td></tr><tr><td style=\"white-space:nowrap\">ImmortalizedCellLine<a name=\"miabis-collection-sample-type-cs-ImmortalizedCellLine\"> </a></td><td>Immortalized Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">IsolatedMicrobe<a name=\"miabis-collection-sample-type-cs-IsolatedMicrobe\"> </a></td><td>Isolated Microbes</td></tr><tr><td style=\"white-space:nowrap\">OtherBodyFluid<a name=\"miabis-collection-sample-type-cs-OtherBodyFluid\"> </a></td><td>Other Body Fluid</td></tr><tr><td style=\"white-space:nowrap\">Plasma<a name=\"miabis-collection-sample-type-cs-Plasma\"> </a></td><td>Plasma</td></tr><tr><td style=\"white-space:nowrap\">PrimaryCells<a name=\"miabis-collection-sample-type-cs-PrimaryCells\"> </a></td><td>Primary Cells</td></tr><tr><td style=\"white-space:nowrap\">PostMortemTissue<a name=\"miabis-collection-sample-type-cs-PostMortemTissue\"> </a></td><td>Post-Mortem Tissue</td></tr><tr><td style=\"white-space:nowrap\">RNA<a name=\"miabis-collection-sample-type-cs-RNA\"> </a></td><td>RNA</td></tr><tr><td style=\"white-space:nowrap\">Saliva<a name=\"miabis-collection-sample-type-cs-Saliva\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">Serum<a name=\"miabis-collection-sample-type-cs-Serum\"> </a></td><td>Serum</td></tr><tr><td style=\"white-space:nowrap\">SpecimenEnvironment<a name=\"miabis-collection-sample-type-cs-SpecimenEnvironment\"> </a></td><td>Specimen from Environment or from food</td></tr><tr><td style=\"white-space:nowrap\">Swab<a name=\"miabis-collection-sample-type-cs-Swab\"> </a></td><td>Swab</td></tr><tr><td style=\"white-space:nowrap\">TissueFrozen<a name=\"miabis-collection-sample-type-cs-TissueFrozen\"> </a></td><td>Tissue (frozen)</td></tr><tr><td style=\"white-space:nowrap\">TissueFFPE<a name=\"miabis-collection-sample-type-cs-TissueFFPE\"> </a></td><td>Tissue (FFPE)</td></tr><tr><td style=\"white-space:nowrap\">Urine<a name=\"miabis-collection-sample-type-cs-Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">Other<a name=\"miabis-collection-sample-type-cs-Other\"> </a></td><td>Other</td></tr></table></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:url [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.0.0"] ; # 
  fhir:name [ fhir:v "CollectionSampleTypeCS"] ; # 
  fhir:title [ fhir:v "MIABIS Collection Sample Type Code System"] ; # 
  fhir:status [ fhir:v "active"] ; # 
  fhir:date [ fhir:v "2025-05-15T13:14:34+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "BBMRI-ERIC"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "BBMRI-ERIC" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://bbmri-eric.eu" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "contact@bbmri-eric.eu" ]     ] )
  ] [
fhir:name [ fhir:v "Radovan Tomasik" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "radovan.tomasik@bbmri-eric.eu" ] ;
fhir:use [ fhir:v "work" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Codes for the collection sample types of the provided samples"] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:count [ fhir:v "22"^^xsd:nonNegativeInteger] ; # 
  fhir:concept ( [
fhir:code [ fhir:v "Blood" ] ;
fhir:display [ fhir:v "Blood" ]
  ] [
fhir:code [ fhir:v "BuffyCoat" ] ;
fhir:display [ fhir:v "Buffy Coat" ]
  ] [
fhir:code [ fhir:v "CancerCellLine" ] ;
fhir:display [ fhir:v "Cancer Cell Lines" ]
  ] [
fhir:code [ fhir:v "DNA" ] ;
fhir:display [ fhir:v "DNA" ]
  ] [
fhir:code [ fhir:v "EntireOrgan" ] ;
fhir:display [ fhir:v "Entire Organ" ]
  ] [
fhir:code [ fhir:v "Faeces" ] ;
fhir:display [ fhir:v "Faeces" ]
  ] [
fhir:code [ fhir:v "EmbryoFetal" ] ;
fhir:display [ fhir:v "Embryo or Fetal tissue" ]
  ] [
fhir:code [ fhir:v "ImmortalizedCellLine" ] ;
fhir:display [ fhir:v "Immortalized Cell Lines" ]
  ] [
fhir:code [ fhir:v "IsolatedMicrobe" ] ;
fhir:display [ fhir:v "Isolated Microbes" ]
  ] [
fhir:code [ fhir:v "OtherBodyFluid" ] ;
fhir:display [ fhir:v "Other Body Fluid" ]
  ] [
fhir:code [ fhir:v "Plasma" ] ;
fhir:display [ fhir:v "Plasma" ]
  ] [
fhir:code [ fhir:v "PrimaryCells" ] ;
fhir:display [ fhir:v "Primary Cells" ]
  ] [
fhir:code [ fhir:v "PostMortemTissue" ] ;
fhir:display [ fhir:v "Post-Mortem Tissue" ]
  ] [
fhir:code [ fhir:v "RNA" ] ;
fhir:display [ fhir:v "RNA" ]
  ] [
fhir:code [ fhir:v "Saliva" ] ;
fhir:display [ fhir:v "Saliva" ]
  ] [
fhir:code [ fhir:v "Serum" ] ;
fhir:display [ fhir:v "Serum" ]
  ] [
fhir:code [ fhir:v "SpecimenEnvironment" ] ;
fhir:display [ fhir:v "Specimen from Environment or from food" ]
  ] [
fhir:code [ fhir:v "Swab" ] ;
fhir:display [ fhir:v "Swab" ]
  ] [
fhir:code [ fhir:v "TissueFrozen" ] ;
fhir:display [ fhir:v "Tissue (frozen)" ]
  ] [
fhir:code [ fhir:v "TissueFFPE" ] ;
fhir:display [ fhir:v "Tissue (FFPE)" ]
  ] [
fhir:code [ fhir:v "Urine" ] ;
fhir:display [ fhir:v "Urine" ]
  ] [
fhir:code [ fhir:v "Other" ] ;
fhir:display [ fhir:v "Other" ]
  ] ) . #