MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

MIABIS on FHIR Implementation Guide - Local Development build (v1.3.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: MIABIS Collection Sample Type Code System - TTL Representation

Active as of 2026-09-08

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/CodeSystem/miabis-collection-sample-type-cs> a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "miabis-collection-sample-type-cs"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem miabis-collection-sample-type-cs</b></p><a name=\"miabis-collection-sample-type-cs\"> </a><a name=\"hcmiabis-collection-sample-type-cs\"> </a><p>This  code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">Blood<a name=\"miabis-collection-sample-type-cs-Blood\"> </a></td><td>Blood</td></tr><tr><td style=\"white-space:nowrap\">BuffyCoat<a name=\"miabis-collection-sample-type-cs-BuffyCoat\"> </a></td><td>Buffy Coat</td></tr><tr><td style=\"white-space:nowrap\">CancerCellLine<a name=\"miabis-collection-sample-type-cs-CancerCellLine\"> </a></td><td>Cancer Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">DNA<a name=\"miabis-collection-sample-type-cs-DNA\"> </a></td><td>DNA</td></tr><tr><td style=\"white-space:nowrap\">EntireOrgan<a name=\"miabis-collection-sample-type-cs-EntireOrgan\"> </a></td><td>Entire Organ</td></tr><tr><td style=\"white-space:nowrap\">Faeces<a name=\"miabis-collection-sample-type-cs-Faeces\"> </a></td><td>Faeces</td></tr><tr><td style=\"white-space:nowrap\">EmbryoFetal<a name=\"miabis-collection-sample-type-cs-EmbryoFetal\"> </a></td><td>Embryo or Fetal tissue</td></tr><tr><td style=\"white-space:nowrap\">ImmortalizedCellLine<a name=\"miabis-collection-sample-type-cs-ImmortalizedCellLine\"> </a></td><td>Immortalized Cell Lines</td></tr><tr><td style=\"white-space:nowrap\">IsolatedMicrobe<a name=\"miabis-collection-sample-type-cs-IsolatedMicrobe\"> </a></td><td>Isolated Microbes</td></tr><tr><td style=\"white-space:nowrap\">OtherBodyFluid<a name=\"miabis-collection-sample-type-cs-OtherBodyFluid\"> </a></td><td>Other Body Fluid</td></tr><tr><td style=\"white-space:nowrap\">Plasma<a name=\"miabis-collection-sample-type-cs-Plasma\"> </a></td><td>Plasma</td></tr><tr><td style=\"white-space:nowrap\">PrimaryCells<a name=\"miabis-collection-sample-type-cs-PrimaryCells\"> </a></td><td>Primary Cells</td></tr><tr><td style=\"white-space:nowrap\">PostMortemTissue<a name=\"miabis-collection-sample-type-cs-PostMortemTissue\"> </a></td><td>Post-Mortem Tissue</td></tr><tr><td style=\"white-space:nowrap\">RNA<a name=\"miabis-collection-sample-type-cs-RNA\"> </a></td><td>RNA</td></tr><tr><td style=\"white-space:nowrap\">Saliva<a name=\"miabis-collection-sample-type-cs-Saliva\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">Serum<a name=\"miabis-collection-sample-type-cs-Serum\"> </a></td><td>Serum</td></tr><tr><td style=\"white-space:nowrap\">SpecimenEnvironment<a name=\"miabis-collection-sample-type-cs-SpecimenEnvironment\"> </a></td><td>Specimen from Environment or from food</td></tr><tr><td style=\"white-space:nowrap\">Swab<a name=\"miabis-collection-sample-type-cs-Swab\"> </a></td><td>Swab</td></tr><tr><td style=\"white-space:nowrap\">TissueFrozen<a name=\"miabis-collection-sample-type-cs-TissueFrozen\"> </a></td><td>Tissue (frozen)</td></tr><tr><td style=\"white-space:nowrap\">TissueFFPE<a name=\"miabis-collection-sample-type-cs-TissueFFPE\"> </a></td><td>Tissue (FFPE)</td></tr><tr><td style=\"white-space:nowrap\">Urine<a name=\"miabis-collection-sample-type-cs-Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">Other<a name=\"miabis-collection-sample-type-cs-Other\"> </a></td><td>Other</td></tr></table></div>"
  ] ;
  fhir:CodeSystem.url [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs"] ;
  fhir:CodeSystem.version [ fhir:value "1.3.0"] ;
  fhir:CodeSystem.name [ fhir:value "CollectionSampleTypeCS"] ;
  fhir:CodeSystem.title [ fhir:value "MIABIS Collection Sample Type Code System"] ;
  fhir:CodeSystem.status [ fhir:value "active"] ;
  fhir:CodeSystem.date [ fhir:value "2026-09-08T16:35:50+00:00"^^xsd:dateTime] ;
  fhir:CodeSystem.publisher [ fhir:value "BBMRI-ERIC"] ;
  fhir:CodeSystem.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "BBMRI-ERIC" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "http://bbmri-eric.eu" ]
     ], [
       fhir:index 1 ;
       fhir:ContactPoint.system [ fhir:value "email" ] ;
       fhir:ContactPoint.value [ fhir:value "contact@bbmri-eric.eu" ]
     ]
  ], [
     fhir:index 1 ;
     fhir:ContactDetail.name [ fhir:value "Radovan Tomasik" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "email" ] ;
       fhir:ContactPoint.value [ fhir:value "radovan.tomasik@bbmri-eric.eu" ] ;
       fhir:ContactPoint.use [ fhir:value "work" ]
     ]
  ] ;
  fhir:CodeSystem.description [ fhir:value "Codes for the collection sample types of the provided samples"] ;
  fhir:CodeSystem.content [ fhir:value "complete"] ;
  fhir:CodeSystem.count [ fhir:value "22"^^xsd:nonNegativeInteger] ;
  fhir:CodeSystem.concept [
     fhir:index 0 ;
     fhir:CodeSystem.concept.code [ fhir:value "Blood" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Blood" ]
  ], [
     fhir:index 1 ;
     fhir:CodeSystem.concept.code [ fhir:value "BuffyCoat" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Buffy Coat" ]
  ], [
     fhir:index 2 ;
     fhir:CodeSystem.concept.code [ fhir:value "CancerCellLine" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Cancer Cell Lines" ]
  ], [
     fhir:index 3 ;
     fhir:CodeSystem.concept.code [ fhir:value "DNA" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "DNA" ]
  ], [
     fhir:index 4 ;
     fhir:CodeSystem.concept.code [ fhir:value "EntireOrgan" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Entire Organ" ]
  ], [
     fhir:index 5 ;
     fhir:CodeSystem.concept.code [ fhir:value "Faeces" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Faeces" ]
  ], [
     fhir:index 6 ;
     fhir:CodeSystem.concept.code [ fhir:value "EmbryoFetal" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Embryo or Fetal tissue" ]
  ], [
     fhir:index 7 ;
     fhir:CodeSystem.concept.code [ fhir:value "ImmortalizedCellLine" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Immortalized Cell Lines" ]
  ], [
     fhir:index 8 ;
     fhir:CodeSystem.concept.code [ fhir:value "IsolatedMicrobe" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Isolated Microbes" ]
  ], [
     fhir:index 9 ;
     fhir:CodeSystem.concept.code [ fhir:value "OtherBodyFluid" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Other Body Fluid" ]
  ], [
     fhir:index 10 ;
     fhir:CodeSystem.concept.code [ fhir:value "Plasma" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Plasma" ]
  ], [
     fhir:index 11 ;
     fhir:CodeSystem.concept.code [ fhir:value "PrimaryCells" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Primary Cells" ]
  ], [
     fhir:index 12 ;
     fhir:CodeSystem.concept.code [ fhir:value "PostMortemTissue" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Post-Mortem Tissue" ]
  ], [
     fhir:index 13 ;
     fhir:CodeSystem.concept.code [ fhir:value "RNA" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "RNA" ]
  ], [
     fhir:index 14 ;
     fhir:CodeSystem.concept.code [ fhir:value "Saliva" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Saliva" ]
  ], [
     fhir:index 15 ;
     fhir:CodeSystem.concept.code [ fhir:value "Serum" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Serum" ]
  ], [
     fhir:index 16 ;
     fhir:CodeSystem.concept.code [ fhir:value "SpecimenEnvironment" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Specimen from Environment or from food" ]
  ], [
     fhir:index 17 ;
     fhir:CodeSystem.concept.code [ fhir:value "Swab" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Swab" ]
  ], [
     fhir:index 18 ;
     fhir:CodeSystem.concept.code [ fhir:value "TissueFrozen" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Tissue (frozen)" ]
  ], [
     fhir:index 19 ;
     fhir:CodeSystem.concept.code [ fhir:value "TissueFFPE" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Tissue (FFPE)" ]
  ], [
     fhir:index 20 ;
     fhir:CodeSystem.concept.code [ fhir:value "Urine" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Urine" ]
  ], [
     fhir:index 21 ;
     fhir:CodeSystem.concept.code [ fhir:value "Other" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "Other" ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/CodeSystem/miabis-collection-sample-type-cs.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/CodeSystem/miabis-collection-sample-type-cs.ttl> .