MIABIS on FHIR Implementation Guide
1.0.0 - CI Build
MIABIS on FHIR Implementation Guide
1.0.0 - CI Build
MIABIS on FHIR Implementation Guide - Local Development build (v1.0.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2025-05-15 |
{
"resourceType" : "CodeSystem",
"id" : "miabis-detailed-samply-type-cs",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem miabis-detailed-samply-type-cs</b></p><a name=\"miabis-detailed-samply-type-cs\"> </a><a name=\"hcmiabis-detailed-samply-type-cs\"> </a><a name=\"miabis-detailed-samply-type-cs-en-US\"> </a><p>This code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">AmnioticFluid<a name=\"miabis-detailed-samply-type-cs-AmnioticFluid\"> </a></td><td>Amniotic fluid</td></tr><tr><td style=\"white-space:nowrap\">AscitesFluid<a name=\"miabis-detailed-samply-type-cs-AscitesFluid\"> </a></td><td>Ascites Fluid</td></tr><tr><td style=\"white-space:nowrap\">Bile<a name=\"miabis-detailed-samply-type-cs-Bile\"> </a></td><td>Bile</td></tr><tr><td style=\"white-space:nowrap\">BodyCavityFluid<a name=\"miabis-detailed-samply-type-cs-BodyCavityFluid\"> </a></td><td>Body cavity fluid</td></tr><tr><td style=\"white-space:nowrap\">Bone<a name=\"miabis-detailed-samply-type-cs-Bone\"> </a></td><td>Bone</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowAspirate<a name=\"miabis-detailed-samply-type-cs-BoneMarrowAspirate\"> </a></td><td>Bone marrow aspirate</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowPlasma<a name=\"miabis-detailed-samply-type-cs-BoneMarrowPlasma\"> </a></td><td>Bone marrow plasma</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowWhole<a name=\"miabis-detailed-samply-type-cs-BoneMarrowWhole\"> </a></td><td>Bone marrow whole</td></tr><tr><td style=\"white-space:nowrap\">BreastMilk<a name=\"miabis-detailed-samply-type-cs-BreastMilk\"> </a></td><td>Breast milk</td></tr><tr><td style=\"white-space:nowrap\">BronchLavage<a name=\"miabis-detailed-samply-type-cs-BronchLavage\"> </a></td><td>Bronchoalveolar lavage</td></tr><tr><td style=\"white-space:nowrap\">BuffyCoat<a name=\"miabis-detailed-samply-type-cs-BuffyCoat\"> </a></td><td>Buffy coat</td></tr><tr><td style=\"white-space:nowrap\">CancerCellLine<a name=\"miabis-detailed-samply-type-cs-CancerCellLine\"> </a></td><td>Cancer cell lines</td></tr><tr><td style=\"white-space:nowrap\">CerebrospinalFluid<a name=\"miabis-detailed-samply-type-cs-CerebrospinalFluid\"> </a></td><td>Cerebrospinal fluid</td></tr><tr><td style=\"white-space:nowrap\">CordBlood<a name=\"miabis-detailed-samply-type-cs-CordBlood\"> </a></td><td>Cord blood</td></tr><tr><td style=\"white-space:nowrap\">DentalPulp<a name=\"miabis-detailed-samply-type-cs-DentalPulp\"> </a></td><td>Dental pulp</td></tr><tr><td style=\"white-space:nowrap\">DNA<a name=\"miabis-detailed-samply-type-cs-DNA\"> </a></td><td>DNA</td></tr><tr><td style=\"white-space:nowrap\">Embryo<a name=\"miabis-detailed-samply-type-cs-Embryo\"> </a></td><td>Embryo</td></tr><tr><td style=\"white-space:nowrap\">EntireOrgan<a name=\"miabis-detailed-samply-type-cs-EntireOrgan\"> </a></td><td>Entire body Organ</td></tr><tr><td style=\"white-space:nowrap\">Faeces<a name=\"miabis-detailed-samply-type-cs-Faeces\"> </a></td><td>Faeces</td></tr><tr><td style=\"white-space:nowrap\">FetalTissue<a name=\"miabis-detailed-samply-type-cs-FetalTissue\"> </a></td><td>Fetal tissue</td></tr><tr><td style=\"white-space:nowrap\">Fibroblast<a name=\"miabis-detailed-samply-type-cs-Fibroblast\"> </a></td><td>Fibroblast</td></tr><tr><td style=\"white-space:nowrap\">FoodSpecimen<a name=\"miabis-detailed-samply-type-cs-FoodSpecimen\"> </a></td><td>Food specimen</td></tr><tr><td style=\"white-space:nowrap\">Gas<a name=\"miabis-detailed-samply-type-cs-Gas\"> </a></td><td>Gas exhaled (breath)</td></tr><tr><td style=\"white-space:nowrap\">GastricFluid<a name=\"miabis-detailed-samply-type-cs-GastricFluid\"> </a></td><td>Gastric fluid</td></tr><tr><td style=\"white-space:nowrap\">Hair<a name=\"miabis-detailed-samply-type-cs-Hair\"> </a></td><td>Hair</td></tr><tr><td style=\"white-space:nowrap\">ImmortalizedCellLine<a name=\"miabis-detailed-samply-type-cs-ImmortalizedCellLine\"> </a></td><td>Immortalized cell line</td></tr><tr><td style=\"white-space:nowrap\">IsolatedMicrobe<a name=\"miabis-detailed-samply-type-cs-IsolatedMicrobe\"> </a></td><td>Isolated microbes</td></tr><tr><td style=\"white-space:nowrap\">IsolatedExosome<a name=\"miabis-detailed-samply-type-cs-IsolatedExosome\"> </a></td><td>Isolated or encriched exosomes</td></tr><tr><td style=\"white-space:nowrap\">IsolatedTumorCell<a name=\"miabis-detailed-samply-type-cs-IsolatedTumorCell\"> </a></td><td>Isolated tumor cells(neoplastic cells)</td></tr><tr><td style=\"white-space:nowrap\">LiquidBiopsy<a name=\"miabis-detailed-samply-type-cs-LiquidBiopsy\"> </a></td><td>Liquid biopsy</td></tr><tr><td style=\"white-space:nowrap\">MenstrualBlood<a name=\"miabis-detailed-samply-type-cs-MenstrualBlood\"> </a></td><td>Menstrual blood</td></tr><tr><td style=\"white-space:nowrap\">Nail<a name=\"miabis-detailed-samply-type-cs-Nail\"> </a></td><td>Nail</td></tr><tr><td style=\"white-space:nowrap\">NasalWashing<a name=\"miabis-detailed-samply-type-cs-NasalWashing\"> </a></td><td>Nasal washing</td></tr><tr><td style=\"white-space:nowrap\">Organoid<a name=\"miabis-detailed-samply-type-cs-Organoid\"> </a></td><td>Organoids</td></tr><tr><td style=\"white-space:nowrap\">Other<a name=\"miabis-detailed-samply-type-cs-Other\"> </a></td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">PericardialFluid<a name=\"miabis-detailed-samply-type-cs-PericardialFluid\"> </a></td><td>Pericardial fluid</td></tr><tr><td style=\"white-space:nowrap\">PBMC<a name=\"miabis-detailed-samply-type-cs-PBMC\"> </a></td><td>Peripheral blood mononuclear cells</td></tr><tr><td style=\"white-space:nowrap\">Placenta<a name=\"miabis-detailed-samply-type-cs-Placenta\"> </a></td><td>Placenta</td></tr><tr><td style=\"white-space:nowrap\">Plasma<a name=\"miabis-detailed-samply-type-cs-Plasma\"> </a></td><td>Plasma</td></tr><tr><td style=\"white-space:nowrap\">PleuralFluid<a name=\"miabis-detailed-samply-type-cs-PleuralFluid\"> </a></td><td>Pleural fluid</td></tr><tr><td style=\"white-space:nowrap\">PostMortemTissue<a name=\"miabis-detailed-samply-type-cs-PostMortemTissue\"> </a></td><td>Post-mortem tissue</td></tr><tr><td style=\"white-space:nowrap\">PrimaryCells<a name=\"miabis-detailed-samply-type-cs-PrimaryCells\"> </a></td><td>Primary cells</td></tr><tr><td style=\"white-space:nowrap\">Protein<a name=\"miabis-detailed-samply-type-cs-Protein\"> </a></td><td>Protein</td></tr><tr><td style=\"white-space:nowrap\">RedBloodCells<a name=\"miabis-detailed-samply-type-cs-RedBloodCells\"> </a></td><td>Red blood cells</td></tr><tr><td style=\"white-space:nowrap\">RNA<a name=\"miabis-detailed-samply-type-cs-RNA\"> </a></td><td>RNA</td></tr><tr><td style=\"white-space:nowrap\">Saliva<a name=\"miabis-detailed-samply-type-cs-Saliva\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">Semen<a name=\"miabis-detailed-samply-type-cs-Semen\"> </a></td><td>Semen</td></tr><tr><td style=\"white-space:nowrap\">Serum<a name=\"miabis-detailed-samply-type-cs-Serum\"> </a></td><td>Serum</td></tr><tr><td style=\"white-space:nowrap\">SpecimenEnvironment<a name=\"miabis-detailed-samply-type-cs-SpecimenEnvironment\"> </a></td><td>Specimen from environment</td></tr><tr><td style=\"white-space:nowrap\">Sputum<a name=\"miabis-detailed-samply-type-cs-Sputum\"> </a></td><td>Sputum</td></tr><tr><td style=\"white-space:nowrap\">StemCells<a name=\"miabis-detailed-samply-type-cs-StemCells\"> </a></td><td>Stem cells and iPS cells</td></tr><tr><td style=\"white-space:nowrap\">Swab<a name=\"miabis-detailed-samply-type-cs-Swab\"> </a></td><td>Swab</td></tr><tr><td style=\"white-space:nowrap\">Sweat<a name=\"miabis-detailed-samply-type-cs-Sweat\"> </a></td><td>Sweat</td></tr><tr><td style=\"white-space:nowrap\">SynovialFluid<a name=\"miabis-detailed-samply-type-cs-SynovialFluid\"> </a></td><td>Synovial fluid</td></tr><tr><td style=\"white-space:nowrap\">Tears<a name=\"miabis-detailed-samply-type-cs-Tears\"> </a></td><td>Tears</td></tr><tr><td style=\"white-space:nowrap\">Teeth<a name=\"miabis-detailed-samply-type-cs-Teeth\"> </a></td><td>Teeth</td></tr><tr><td style=\"white-space:nowrap\">TissueFixed<a name=\"miabis-detailed-samply-type-cs-TissueFixed\"> </a></td><td>Tissue (fixed)</td></tr><tr><td style=\"white-space:nowrap\">TissueFreshFrozen<a name=\"miabis-detailed-samply-type-cs-TissueFreshFrozen\"> </a></td><td>Tissue (fresh frozen)</td></tr><tr><td style=\"white-space:nowrap\">UmbilicalCord<a name=\"miabis-detailed-samply-type-cs-UmbilicalCord\"> </a></td><td>Umbilical cord</td></tr><tr><td style=\"white-space:nowrap\">Urine<a name=\"miabis-detailed-samply-type-cs-Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">UrineSediment<a name=\"miabis-detailed-samply-type-cs-UrineSediment\"> </a></td><td>Urine sediment</td></tr><tr><td style=\"white-space:nowrap\">VitreousFluid<a name=\"miabis-detailed-samply-type-cs-VitreousFluid\"> </a></td><td>Vitreous fluid</td></tr><tr><td style=\"white-space:nowrap\">WholeBlood<a name=\"miabis-detailed-samply-type-cs-WholeBlood\"> </a></td><td>Whole blood</td></tr><tr><td style=\"white-space:nowrap\">WholeBloodDried<a name=\"miabis-detailed-samply-type-cs-WholeBloodDried\"> </a></td><td>Whole blood dried(eg. Guthrie card)</td></tr></table></div>"
},
"url" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs",
"version" : "1.0.0",
"name" : "DetailedSampleTypeCS",
"title" : "DetailedSampleType",
"status" : "active",
"date" : "2025-05-15T13:14:34+00:00",
"publisher" : "BBMRI-ERIC",
"contact" : [
{
"name" : "BBMRI-ERIC",
"telecom" : [
{
"system" : "url",
"value" : "http://bbmri-eric.eu"
},
{
"system" : "email",
"value" : "contact@bbmri-eric.eu"
}
]
},
{
"name" : "Radovan Tomasik",
"telecom" : [
{
"system" : "email",
"value" : "radovan.tomasik@bbmri-eric.eu",
"use" : "work"
}
]
}
],
"description" : "Code system for the detailed sample type of a sample",
"content" : "complete",
"count" : 64,
"concept" : [
{
"code" : "AmnioticFluid",
"display" : "Amniotic fluid"
},
{
"code" : "AscitesFluid",
"display" : "Ascites Fluid"
},
{
"code" : "Bile",
"display" : "Bile"
},
{
"code" : "BodyCavityFluid",
"display" : "Body cavity fluid"
},
{
"code" : "Bone",
"display" : "Bone"
},
{
"code" : "BoneMarrowAspirate",
"display" : "Bone marrow aspirate"
},
{
"code" : "BoneMarrowPlasma",
"display" : "Bone marrow plasma"
},
{
"code" : "BoneMarrowWhole",
"display" : "Bone marrow whole"
},
{
"code" : "BreastMilk",
"display" : "Breast milk"
},
{
"code" : "BronchLavage",
"display" : "Bronchoalveolar lavage"
},
{
"code" : "BuffyCoat",
"display" : "Buffy coat"
},
{
"code" : "CancerCellLine",
"display" : "Cancer cell lines"
},
{
"code" : "CerebrospinalFluid",
"display" : "Cerebrospinal fluid"
},
{
"code" : "CordBlood",
"display" : "Cord blood"
},
{
"code" : "DentalPulp",
"display" : "Dental pulp"
},
{
"code" : "DNA",
"display" : "DNA"
},
{
"code" : "Embryo",
"display" : "Embryo"
},
{
"code" : "EntireOrgan",
"display" : "Entire body Organ"
},
{
"code" : "Faeces",
"display" : "Faeces"
},
{
"code" : "FetalTissue",
"display" : "Fetal tissue"
},
{
"code" : "Fibroblast",
"display" : "Fibroblast"
},
{
"code" : "FoodSpecimen",
"display" : "Food specimen"
},
{
"code" : "Gas",
"display" : "Gas exhaled (breath)"
},
{
"code" : "GastricFluid",
"display" : "Gastric fluid"
},
{
"code" : "Hair",
"display" : "Hair"
},
{
"code" : "ImmortalizedCellLine",
"display" : "Immortalized cell line"
},
{
"code" : "IsolatedMicrobe",
"display" : "Isolated microbes"
},
{
"code" : "IsolatedExosome",
"display" : "Isolated or encriched exosomes"
},
{
"code" : "IsolatedTumorCell",
"display" : "Isolated tumor cells(neoplastic cells)"
},
{
"code" : "LiquidBiopsy",
"display" : "Liquid biopsy"
},
{
"code" : "MenstrualBlood",
"display" : "Menstrual blood"
},
{
"code" : "Nail",
"display" : "Nail"
},
{
"code" : "NasalWashing",
"display" : "Nasal washing"
},
{
"code" : "Organoid",
"display" : "Organoids"
},
{
"code" : "Other",
"display" : "Other"
},
{
"code" : "PericardialFluid",
"display" : "Pericardial fluid"
},
{
"code" : "PBMC",
"display" : "Peripheral blood mononuclear cells"
},
{
"code" : "Placenta",
"display" : "Placenta"
},
{
"code" : "Plasma",
"display" : "Plasma"
},
{
"code" : "PleuralFluid",
"display" : "Pleural fluid"
},
{
"code" : "PostMortemTissue",
"display" : "Post-mortem tissue"
},
{
"code" : "PrimaryCells",
"display" : "Primary cells"
},
{
"code" : "Protein",
"display" : "Protein"
},
{
"code" : "RedBloodCells",
"display" : "Red blood cells"
},
{
"code" : "RNA",
"display" : "RNA"
},
{
"code" : "Saliva",
"display" : "Saliva"
},
{
"code" : "Semen",
"display" : "Semen"
},
{
"code" : "Serum",
"display" : "Serum"
},
{
"code" : "SpecimenEnvironment",
"display" : "Specimen from environment"
},
{
"code" : "Sputum",
"display" : "Sputum"
},
{
"code" : "StemCells",
"display" : "Stem cells and iPS cells"
},
{
"code" : "Swab",
"display" : "Swab"
},
{
"code" : "Sweat",
"display" : "Sweat"
},
{
"code" : "SynovialFluid",
"display" : "Synovial fluid"
},
{
"code" : "Tears",
"display" : "Tears"
},
{
"code" : "Teeth",
"display" : "Teeth"
},
{
"code" : "TissueFixed",
"display" : "Tissue (fixed)"
},
{
"code" : "TissueFreshFrozen",
"display" : "Tissue (fresh frozen)"
},
{
"code" : "UmbilicalCord",
"display" : "Umbilical cord"
},
{
"code" : "Urine",
"display" : "Urine"
},
{
"code" : "UrineSediment",
"display" : "Urine sediment"
},
{
"code" : "VitreousFluid",
"display" : "Vitreous fluid"
},
{
"code" : "WholeBlood",
"display" : "Whole blood"
},
{
"code" : "WholeBloodDried",
"display" : "Whole blood dried(eg. Guthrie card)"
}
]
}
IG © 2024+ BBMRI-ERIC. Package fhir.example#1.0.0 based on FHIR 4.0.1. Generated 2025-05-15
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