DetailedSampleType - TTL Representation - MIABIS on FHIR Implementation Guide v1.0.0

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: DetailedSampleType - TTL Representation

Active as of 2025-05-15
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "miabis-detailed-samply-type-cs"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem miabis-detailed-samply-type-cs</b></p><a name=\"miabis-detailed-samply-type-cs\"> </a><a name=\"hcmiabis-detailed-samply-type-cs\"> </a><a name=\"miabis-detailed-samply-type-cs-en-US\"> </a><p>This  code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">AmnioticFluid<a name=\"miabis-detailed-samply-type-cs-AmnioticFluid\"> </a></td><td>Amniotic fluid</td></tr><tr><td style=\"white-space:nowrap\">AscitesFluid<a name=\"miabis-detailed-samply-type-cs-AscitesFluid\"> </a></td><td>Ascites Fluid</td></tr><tr><td style=\"white-space:nowrap\">Bile<a name=\"miabis-detailed-samply-type-cs-Bile\"> </a></td><td>Bile</td></tr><tr><td style=\"white-space:nowrap\">BodyCavityFluid<a name=\"miabis-detailed-samply-type-cs-BodyCavityFluid\"> </a></td><td>Body cavity fluid</td></tr><tr><td style=\"white-space:nowrap\">Bone<a name=\"miabis-detailed-samply-type-cs-Bone\"> </a></td><td>Bone</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowAspirate<a name=\"miabis-detailed-samply-type-cs-BoneMarrowAspirate\"> </a></td><td>Bone marrow aspirate</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowPlasma<a name=\"miabis-detailed-samply-type-cs-BoneMarrowPlasma\"> </a></td><td>Bone marrow plasma</td></tr><tr><td style=\"white-space:nowrap\">BoneMarrowWhole<a name=\"miabis-detailed-samply-type-cs-BoneMarrowWhole\"> </a></td><td>Bone marrow whole</td></tr><tr><td style=\"white-space:nowrap\">BreastMilk<a name=\"miabis-detailed-samply-type-cs-BreastMilk\"> </a></td><td>Breast milk</td></tr><tr><td style=\"white-space:nowrap\">BronchLavage<a name=\"miabis-detailed-samply-type-cs-BronchLavage\"> </a></td><td>Bronchoalveolar lavage</td></tr><tr><td style=\"white-space:nowrap\">BuffyCoat<a name=\"miabis-detailed-samply-type-cs-BuffyCoat\"> </a></td><td>Buffy coat</td></tr><tr><td style=\"white-space:nowrap\">CancerCellLine<a name=\"miabis-detailed-samply-type-cs-CancerCellLine\"> </a></td><td>Cancer cell lines</td></tr><tr><td style=\"white-space:nowrap\">CerebrospinalFluid<a name=\"miabis-detailed-samply-type-cs-CerebrospinalFluid\"> </a></td><td>Cerebrospinal fluid</td></tr><tr><td style=\"white-space:nowrap\">CordBlood<a name=\"miabis-detailed-samply-type-cs-CordBlood\"> </a></td><td>Cord blood</td></tr><tr><td style=\"white-space:nowrap\">DentalPulp<a name=\"miabis-detailed-samply-type-cs-DentalPulp\"> </a></td><td>Dental pulp</td></tr><tr><td style=\"white-space:nowrap\">DNA<a name=\"miabis-detailed-samply-type-cs-DNA\"> </a></td><td>DNA</td></tr><tr><td style=\"white-space:nowrap\">Embryo<a name=\"miabis-detailed-samply-type-cs-Embryo\"> </a></td><td>Embryo</td></tr><tr><td style=\"white-space:nowrap\">EntireOrgan<a name=\"miabis-detailed-samply-type-cs-EntireOrgan\"> </a></td><td>Entire body Organ</td></tr><tr><td style=\"white-space:nowrap\">Faeces<a name=\"miabis-detailed-samply-type-cs-Faeces\"> </a></td><td>Faeces</td></tr><tr><td style=\"white-space:nowrap\">FetalTissue<a name=\"miabis-detailed-samply-type-cs-FetalTissue\"> </a></td><td>Fetal tissue</td></tr><tr><td style=\"white-space:nowrap\">Fibroblast<a name=\"miabis-detailed-samply-type-cs-Fibroblast\"> </a></td><td>Fibroblast</td></tr><tr><td style=\"white-space:nowrap\">FoodSpecimen<a name=\"miabis-detailed-samply-type-cs-FoodSpecimen\"> </a></td><td>Food specimen</td></tr><tr><td style=\"white-space:nowrap\">Gas<a name=\"miabis-detailed-samply-type-cs-Gas\"> </a></td><td>Gas exhaled (breath)</td></tr><tr><td style=\"white-space:nowrap\">GastricFluid<a name=\"miabis-detailed-samply-type-cs-GastricFluid\"> </a></td><td>Gastric fluid</td></tr><tr><td style=\"white-space:nowrap\">Hair<a name=\"miabis-detailed-samply-type-cs-Hair\"> </a></td><td>Hair</td></tr><tr><td style=\"white-space:nowrap\">ImmortalizedCellLine<a name=\"miabis-detailed-samply-type-cs-ImmortalizedCellLine\"> </a></td><td>Immortalized cell line</td></tr><tr><td style=\"white-space:nowrap\">IsolatedMicrobe<a name=\"miabis-detailed-samply-type-cs-IsolatedMicrobe\"> </a></td><td>Isolated microbes</td></tr><tr><td style=\"white-space:nowrap\">IsolatedExosome<a name=\"miabis-detailed-samply-type-cs-IsolatedExosome\"> </a></td><td>Isolated or encriched exosomes</td></tr><tr><td style=\"white-space:nowrap\">IsolatedTumorCell<a name=\"miabis-detailed-samply-type-cs-IsolatedTumorCell\"> </a></td><td>Isolated tumor cells(neoplastic cells)</td></tr><tr><td style=\"white-space:nowrap\">LiquidBiopsy<a name=\"miabis-detailed-samply-type-cs-LiquidBiopsy\"> </a></td><td>Liquid biopsy</td></tr><tr><td style=\"white-space:nowrap\">MenstrualBlood<a name=\"miabis-detailed-samply-type-cs-MenstrualBlood\"> </a></td><td>Menstrual blood</td></tr><tr><td style=\"white-space:nowrap\">Nail<a name=\"miabis-detailed-samply-type-cs-Nail\"> </a></td><td>Nail</td></tr><tr><td style=\"white-space:nowrap\">NasalWashing<a name=\"miabis-detailed-samply-type-cs-NasalWashing\"> </a></td><td>Nasal washing</td></tr><tr><td style=\"white-space:nowrap\">Organoid<a name=\"miabis-detailed-samply-type-cs-Organoid\"> </a></td><td>Organoids</td></tr><tr><td style=\"white-space:nowrap\">Other<a name=\"miabis-detailed-samply-type-cs-Other\"> </a></td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">PericardialFluid<a name=\"miabis-detailed-samply-type-cs-PericardialFluid\"> </a></td><td>Pericardial fluid</td></tr><tr><td style=\"white-space:nowrap\">PBMC<a name=\"miabis-detailed-samply-type-cs-PBMC\"> </a></td><td>Peripheral blood mononuclear cells</td></tr><tr><td style=\"white-space:nowrap\">Placenta<a name=\"miabis-detailed-samply-type-cs-Placenta\"> </a></td><td>Placenta</td></tr><tr><td style=\"white-space:nowrap\">Plasma<a name=\"miabis-detailed-samply-type-cs-Plasma\"> </a></td><td>Plasma</td></tr><tr><td style=\"white-space:nowrap\">PleuralFluid<a name=\"miabis-detailed-samply-type-cs-PleuralFluid\"> </a></td><td>Pleural fluid</td></tr><tr><td style=\"white-space:nowrap\">PostMortemTissue<a name=\"miabis-detailed-samply-type-cs-PostMortemTissue\"> </a></td><td>Post-mortem tissue</td></tr><tr><td style=\"white-space:nowrap\">PrimaryCells<a name=\"miabis-detailed-samply-type-cs-PrimaryCells\"> </a></td><td>Primary cells</td></tr><tr><td style=\"white-space:nowrap\">Protein<a name=\"miabis-detailed-samply-type-cs-Protein\"> </a></td><td>Protein</td></tr><tr><td style=\"white-space:nowrap\">RedBloodCells<a name=\"miabis-detailed-samply-type-cs-RedBloodCells\"> </a></td><td>Red blood cells</td></tr><tr><td style=\"white-space:nowrap\">RNA<a name=\"miabis-detailed-samply-type-cs-RNA\"> </a></td><td>RNA</td></tr><tr><td style=\"white-space:nowrap\">Saliva<a name=\"miabis-detailed-samply-type-cs-Saliva\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">Semen<a name=\"miabis-detailed-samply-type-cs-Semen\"> </a></td><td>Semen</td></tr><tr><td style=\"white-space:nowrap\">Serum<a name=\"miabis-detailed-samply-type-cs-Serum\"> </a></td><td>Serum</td></tr><tr><td style=\"white-space:nowrap\">SpecimenEnvironment<a name=\"miabis-detailed-samply-type-cs-SpecimenEnvironment\"> </a></td><td>Specimen from environment</td></tr><tr><td style=\"white-space:nowrap\">Sputum<a name=\"miabis-detailed-samply-type-cs-Sputum\"> </a></td><td>Sputum</td></tr><tr><td style=\"white-space:nowrap\">StemCells<a name=\"miabis-detailed-samply-type-cs-StemCells\"> </a></td><td>Stem cells and iPS cells</td></tr><tr><td style=\"white-space:nowrap\">Swab<a name=\"miabis-detailed-samply-type-cs-Swab\"> </a></td><td>Swab</td></tr><tr><td style=\"white-space:nowrap\">Sweat<a name=\"miabis-detailed-samply-type-cs-Sweat\"> </a></td><td>Sweat</td></tr><tr><td style=\"white-space:nowrap\">SynovialFluid<a name=\"miabis-detailed-samply-type-cs-SynovialFluid\"> </a></td><td>Synovial fluid</td></tr><tr><td style=\"white-space:nowrap\">Tears<a name=\"miabis-detailed-samply-type-cs-Tears\"> </a></td><td>Tears</td></tr><tr><td style=\"white-space:nowrap\">Teeth<a name=\"miabis-detailed-samply-type-cs-Teeth\"> </a></td><td>Teeth</td></tr><tr><td style=\"white-space:nowrap\">TissueFixed<a name=\"miabis-detailed-samply-type-cs-TissueFixed\"> </a></td><td>Tissue (fixed)</td></tr><tr><td style=\"white-space:nowrap\">TissueFreshFrozen<a name=\"miabis-detailed-samply-type-cs-TissueFreshFrozen\"> </a></td><td>Tissue (fresh frozen)</td></tr><tr><td style=\"white-space:nowrap\">UmbilicalCord<a name=\"miabis-detailed-samply-type-cs-UmbilicalCord\"> </a></td><td>Umbilical cord</td></tr><tr><td style=\"white-space:nowrap\">Urine<a name=\"miabis-detailed-samply-type-cs-Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">UrineSediment<a name=\"miabis-detailed-samply-type-cs-UrineSediment\"> </a></td><td>Urine sediment</td></tr><tr><td style=\"white-space:nowrap\">VitreousFluid<a name=\"miabis-detailed-samply-type-cs-VitreousFluid\"> </a></td><td>Vitreous fluid</td></tr><tr><td style=\"white-space:nowrap\">WholeBlood<a name=\"miabis-detailed-samply-type-cs-WholeBlood\"> </a></td><td>Whole blood</td></tr><tr><td style=\"white-space:nowrap\">WholeBloodDried<a name=\"miabis-detailed-samply-type-cs-WholeBloodDried\"> </a></td><td>Whole blood dried(eg. Guthrie card)</td></tr></table></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:url [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.0.0"] ; # 
  fhir:name [ fhir:v "DetailedSampleTypeCS"] ; # 
  fhir:title [ fhir:v "DetailedSampleType"] ; # 
  fhir:status [ fhir:v "active"] ; # 
  fhir:date [ fhir:v "2025-05-15T13:14:34+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "BBMRI-ERIC"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "BBMRI-ERIC" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://bbmri-eric.eu" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "contact@bbmri-eric.eu" ]     ] )
  ] [
fhir:name [ fhir:v "Radovan Tomasik" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "radovan.tomasik@bbmri-eric.eu" ] ;
fhir:use [ fhir:v "work" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Code system for the detailed sample type of a sample"] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:count [ fhir:v "64"^^xsd:nonNegativeInteger] ; # 
  fhir:concept ( [
fhir:code [ fhir:v "AmnioticFluid" ] ;
fhir:display [ fhir:v "Amniotic fluid" ]
  ] [
fhir:code [ fhir:v "AscitesFluid" ] ;
fhir:display [ fhir:v "Ascites Fluid" ]
  ] [
fhir:code [ fhir:v "Bile" ] ;
fhir:display [ fhir:v "Bile" ]
  ] [
fhir:code [ fhir:v "BodyCavityFluid" ] ;
fhir:display [ fhir:v "Body cavity fluid" ]
  ] [
fhir:code [ fhir:v "Bone" ] ;
fhir:display [ fhir:v "Bone" ]
  ] [
fhir:code [ fhir:v "BoneMarrowAspirate" ] ;
fhir:display [ fhir:v "Bone marrow aspirate" ]
  ] [
fhir:code [ fhir:v "BoneMarrowPlasma" ] ;
fhir:display [ fhir:v "Bone marrow plasma" ]
  ] [
fhir:code [ fhir:v "BoneMarrowWhole" ] ;
fhir:display [ fhir:v "Bone marrow whole" ]
  ] [
fhir:code [ fhir:v "BreastMilk" ] ;
fhir:display [ fhir:v "Breast milk" ]
  ] [
fhir:code [ fhir:v "BronchLavage" ] ;
fhir:display [ fhir:v "Bronchoalveolar lavage" ]
  ] [
fhir:code [ fhir:v "BuffyCoat" ] ;
fhir:display [ fhir:v "Buffy coat" ]
  ] [
fhir:code [ fhir:v "CancerCellLine" ] ;
fhir:display [ fhir:v "Cancer cell lines" ]
  ] [
fhir:code [ fhir:v "CerebrospinalFluid" ] ;
fhir:display [ fhir:v "Cerebrospinal fluid" ]
  ] [
fhir:code [ fhir:v "CordBlood" ] ;
fhir:display [ fhir:v "Cord blood" ]
  ] [
fhir:code [ fhir:v "DentalPulp" ] ;
fhir:display [ fhir:v "Dental pulp" ]
  ] [
fhir:code [ fhir:v "DNA" ] ;
fhir:display [ fhir:v "DNA" ]
  ] [
fhir:code [ fhir:v "Embryo" ] ;
fhir:display [ fhir:v "Embryo" ]
  ] [
fhir:code [ fhir:v "EntireOrgan" ] ;
fhir:display [ fhir:v "Entire body Organ" ]
  ] [
fhir:code [ fhir:v "Faeces" ] ;
fhir:display [ fhir:v "Faeces" ]
  ] [
fhir:code [ fhir:v "FetalTissue" ] ;
fhir:display [ fhir:v "Fetal tissue" ]
  ] [
fhir:code [ fhir:v "Fibroblast" ] ;
fhir:display [ fhir:v "Fibroblast" ]
  ] [
fhir:code [ fhir:v "FoodSpecimen" ] ;
fhir:display [ fhir:v "Food specimen" ]
  ] [
fhir:code [ fhir:v "Gas" ] ;
fhir:display [ fhir:v "Gas exhaled (breath)" ]
  ] [
fhir:code [ fhir:v "GastricFluid" ] ;
fhir:display [ fhir:v "Gastric fluid" ]
  ] [
fhir:code [ fhir:v "Hair" ] ;
fhir:display [ fhir:v "Hair" ]
  ] [
fhir:code [ fhir:v "ImmortalizedCellLine" ] ;
fhir:display [ fhir:v "Immortalized cell line" ]
  ] [
fhir:code [ fhir:v "IsolatedMicrobe" ] ;
fhir:display [ fhir:v "Isolated microbes" ]
  ] [
fhir:code [ fhir:v "IsolatedExosome" ] ;
fhir:display [ fhir:v "Isolated or encriched exosomes" ]
  ] [
fhir:code [ fhir:v "IsolatedTumorCell" ] ;
fhir:display [ fhir:v "Isolated tumor cells(neoplastic cells)" ]
  ] [
fhir:code [ fhir:v "LiquidBiopsy" ] ;
fhir:display [ fhir:v "Liquid biopsy" ]
  ] [
fhir:code [ fhir:v "MenstrualBlood" ] ;
fhir:display [ fhir:v "Menstrual blood" ]
  ] [
fhir:code [ fhir:v "Nail" ] ;
fhir:display [ fhir:v "Nail" ]
  ] [
fhir:code [ fhir:v "NasalWashing" ] ;
fhir:display [ fhir:v "Nasal washing" ]
  ] [
fhir:code [ fhir:v "Organoid" ] ;
fhir:display [ fhir:v "Organoids" ]
  ] [
fhir:code [ fhir:v "Other" ] ;
fhir:display [ fhir:v "Other" ]
  ] [
fhir:code [ fhir:v "PericardialFluid" ] ;
fhir:display [ fhir:v "Pericardial fluid" ]
  ] [
fhir:code [ fhir:v "PBMC" ] ;
fhir:display [ fhir:v "Peripheral blood mononuclear cells" ]
  ] [
fhir:code [ fhir:v "Placenta" ] ;
fhir:display [ fhir:v "Placenta" ]
  ] [
fhir:code [ fhir:v "Plasma" ] ;
fhir:display [ fhir:v "Plasma" ]
  ] [
fhir:code [ fhir:v "PleuralFluid" ] ;
fhir:display [ fhir:v "Pleural fluid" ]
  ] [
fhir:code [ fhir:v "PostMortemTissue" ] ;
fhir:display [ fhir:v "Post-mortem tissue" ]
  ] [
fhir:code [ fhir:v "PrimaryCells" ] ;
fhir:display [ fhir:v "Primary cells" ]
  ] [
fhir:code [ fhir:v "Protein" ] ;
fhir:display [ fhir:v "Protein" ]
  ] [
fhir:code [ fhir:v "RedBloodCells" ] ;
fhir:display [ fhir:v "Red blood cells" ]
  ] [
fhir:code [ fhir:v "RNA" ] ;
fhir:display [ fhir:v "RNA" ]
  ] [
fhir:code [ fhir:v "Saliva" ] ;
fhir:display [ fhir:v "Saliva" ]
  ] [
fhir:code [ fhir:v "Semen" ] ;
fhir:display [ fhir:v "Semen" ]
  ] [
fhir:code [ fhir:v "Serum" ] ;
fhir:display [ fhir:v "Serum" ]
  ] [
fhir:code [ fhir:v "SpecimenEnvironment" ] ;
fhir:display [ fhir:v "Specimen from environment" ]
  ] [
fhir:code [ fhir:v "Sputum" ] ;
fhir:display [ fhir:v "Sputum" ]
  ] [
fhir:code [ fhir:v "StemCells" ] ;
fhir:display [ fhir:v "Stem cells and iPS cells" ]
  ] [
fhir:code [ fhir:v "Swab" ] ;
fhir:display [ fhir:v "Swab" ]
  ] [
fhir:code [ fhir:v "Sweat" ] ;
fhir:display [ fhir:v "Sweat" ]
  ] [
fhir:code [ fhir:v "SynovialFluid" ] ;
fhir:display [ fhir:v "Synovial fluid" ]
  ] [
fhir:code [ fhir:v "Tears" ] ;
fhir:display [ fhir:v "Tears" ]
  ] [
fhir:code [ fhir:v "Teeth" ] ;
fhir:display [ fhir:v "Teeth" ]
  ] [
fhir:code [ fhir:v "TissueFixed" ] ;
fhir:display [ fhir:v "Tissue (fixed)" ]
  ] [
fhir:code [ fhir:v "TissueFreshFrozen" ] ;
fhir:display [ fhir:v "Tissue (fresh frozen)" ]
  ] [
fhir:code [ fhir:v "UmbilicalCord" ] ;
fhir:display [ fhir:v "Umbilical cord" ]
  ] [
fhir:code [ fhir:v "Urine" ] ;
fhir:display [ fhir:v "Urine" ]
  ] [
fhir:code [ fhir:v "UrineSediment" ] ;
fhir:display [ fhir:v "Urine sediment" ]
  ] [
fhir:code [ fhir:v "VitreousFluid" ] ;
fhir:display [ fhir:v "Vitreous fluid" ]
  ] [
fhir:code [ fhir:v "WholeBlood" ] ;
fhir:display [ fhir:v "Whole blood" ]
  ] [
fhir:code [ fhir:v "WholeBloodDried" ] ;
fhir:display [ fhir:v "Whole blood dried(eg. Guthrie card)" ]
  ] ) . #