MIABIS on FHIR Implementation Guide
1.0.0 - CI Build
MIABIS on FHIR Implementation Guide
1.0.0 - CI Build
MIABIS on FHIR Implementation Guide - Local Development build (v1.0.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2025-05-15 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="miabis-detailed-samply-type-cs"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem miabis-detailed-samply-type-cs</b></p><a name="miabis-detailed-samply-type-cs"> </a><a name="hcmiabis-detailed-samply-type-cs"> </a><a name="miabis-detailed-samply-type-cs-en-US"> </a><p>This code system <code>https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">AmnioticFluid<a name="miabis-detailed-samply-type-cs-AmnioticFluid"> </a></td><td>Amniotic fluid</td></tr><tr><td style="white-space:nowrap">AscitesFluid<a name="miabis-detailed-samply-type-cs-AscitesFluid"> </a></td><td>Ascites Fluid</td></tr><tr><td style="white-space:nowrap">Bile<a name="miabis-detailed-samply-type-cs-Bile"> </a></td><td>Bile</td></tr><tr><td style="white-space:nowrap">BodyCavityFluid<a name="miabis-detailed-samply-type-cs-BodyCavityFluid"> </a></td><td>Body cavity fluid</td></tr><tr><td style="white-space:nowrap">Bone<a name="miabis-detailed-samply-type-cs-Bone"> </a></td><td>Bone</td></tr><tr><td style="white-space:nowrap">BoneMarrowAspirate<a name="miabis-detailed-samply-type-cs-BoneMarrowAspirate"> </a></td><td>Bone marrow aspirate</td></tr><tr><td style="white-space:nowrap">BoneMarrowPlasma<a name="miabis-detailed-samply-type-cs-BoneMarrowPlasma"> </a></td><td>Bone marrow plasma</td></tr><tr><td style="white-space:nowrap">BoneMarrowWhole<a name="miabis-detailed-samply-type-cs-BoneMarrowWhole"> </a></td><td>Bone marrow whole</td></tr><tr><td style="white-space:nowrap">BreastMilk<a name="miabis-detailed-samply-type-cs-BreastMilk"> </a></td><td>Breast milk</td></tr><tr><td style="white-space:nowrap">BronchLavage<a name="miabis-detailed-samply-type-cs-BronchLavage"> </a></td><td>Bronchoalveolar lavage</td></tr><tr><td style="white-space:nowrap">BuffyCoat<a name="miabis-detailed-samply-type-cs-BuffyCoat"> </a></td><td>Buffy coat</td></tr><tr><td style="white-space:nowrap">CancerCellLine<a name="miabis-detailed-samply-type-cs-CancerCellLine"> </a></td><td>Cancer cell lines</td></tr><tr><td style="white-space:nowrap">CerebrospinalFluid<a name="miabis-detailed-samply-type-cs-CerebrospinalFluid"> </a></td><td>Cerebrospinal fluid</td></tr><tr><td style="white-space:nowrap">CordBlood<a name="miabis-detailed-samply-type-cs-CordBlood"> </a></td><td>Cord blood</td></tr><tr><td style="white-space:nowrap">DentalPulp<a name="miabis-detailed-samply-type-cs-DentalPulp"> </a></td><td>Dental pulp</td></tr><tr><td style="white-space:nowrap">DNA<a name="miabis-detailed-samply-type-cs-DNA"> </a></td><td>DNA</td></tr><tr><td style="white-space:nowrap">Embryo<a name="miabis-detailed-samply-type-cs-Embryo"> </a></td><td>Embryo</td></tr><tr><td style="white-space:nowrap">EntireOrgan<a name="miabis-detailed-samply-type-cs-EntireOrgan"> </a></td><td>Entire body Organ</td></tr><tr><td style="white-space:nowrap">Faeces<a name="miabis-detailed-samply-type-cs-Faeces"> </a></td><td>Faeces</td></tr><tr><td style="white-space:nowrap">FetalTissue<a name="miabis-detailed-samply-type-cs-FetalTissue"> </a></td><td>Fetal tissue</td></tr><tr><td style="white-space:nowrap">Fibroblast<a name="miabis-detailed-samply-type-cs-Fibroblast"> </a></td><td>Fibroblast</td></tr><tr><td style="white-space:nowrap">FoodSpecimen<a name="miabis-detailed-samply-type-cs-FoodSpecimen"> </a></td><td>Food specimen</td></tr><tr><td style="white-space:nowrap">Gas<a name="miabis-detailed-samply-type-cs-Gas"> </a></td><td>Gas exhaled (breath)</td></tr><tr><td style="white-space:nowrap">GastricFluid<a name="miabis-detailed-samply-type-cs-GastricFluid"> </a></td><td>Gastric fluid</td></tr><tr><td style="white-space:nowrap">Hair<a name="miabis-detailed-samply-type-cs-Hair"> </a></td><td>Hair</td></tr><tr><td style="white-space:nowrap">ImmortalizedCellLine<a name="miabis-detailed-samply-type-cs-ImmortalizedCellLine"> </a></td><td>Immortalized cell line</td></tr><tr><td style="white-space:nowrap">IsolatedMicrobe<a name="miabis-detailed-samply-type-cs-IsolatedMicrobe"> </a></td><td>Isolated microbes</td></tr><tr><td style="white-space:nowrap">IsolatedExosome<a name="miabis-detailed-samply-type-cs-IsolatedExosome"> </a></td><td>Isolated or encriched exosomes</td></tr><tr><td style="white-space:nowrap">IsolatedTumorCell<a name="miabis-detailed-samply-type-cs-IsolatedTumorCell"> </a></td><td>Isolated tumor cells(neoplastic cells)</td></tr><tr><td style="white-space:nowrap">LiquidBiopsy<a name="miabis-detailed-samply-type-cs-LiquidBiopsy"> </a></td><td>Liquid biopsy</td></tr><tr><td style="white-space:nowrap">MenstrualBlood<a name="miabis-detailed-samply-type-cs-MenstrualBlood"> </a></td><td>Menstrual blood</td></tr><tr><td style="white-space:nowrap">Nail<a name="miabis-detailed-samply-type-cs-Nail"> </a></td><td>Nail</td></tr><tr><td style="white-space:nowrap">NasalWashing<a name="miabis-detailed-samply-type-cs-NasalWashing"> </a></td><td>Nasal washing</td></tr><tr><td style="white-space:nowrap">Organoid<a name="miabis-detailed-samply-type-cs-Organoid"> </a></td><td>Organoids</td></tr><tr><td style="white-space:nowrap">Other<a name="miabis-detailed-samply-type-cs-Other"> </a></td><td>Other</td></tr><tr><td style="white-space:nowrap">PericardialFluid<a name="miabis-detailed-samply-type-cs-PericardialFluid"> </a></td><td>Pericardial fluid</td></tr><tr><td style="white-space:nowrap">PBMC<a name="miabis-detailed-samply-type-cs-PBMC"> </a></td><td>Peripheral blood mononuclear cells</td></tr><tr><td style="white-space:nowrap">Placenta<a name="miabis-detailed-samply-type-cs-Placenta"> </a></td><td>Placenta</td></tr><tr><td style="white-space:nowrap">Plasma<a name="miabis-detailed-samply-type-cs-Plasma"> </a></td><td>Plasma</td></tr><tr><td style="white-space:nowrap">PleuralFluid<a name="miabis-detailed-samply-type-cs-PleuralFluid"> </a></td><td>Pleural fluid</td></tr><tr><td style="white-space:nowrap">PostMortemTissue<a name="miabis-detailed-samply-type-cs-PostMortemTissue"> </a></td><td>Post-mortem tissue</td></tr><tr><td style="white-space:nowrap">PrimaryCells<a name="miabis-detailed-samply-type-cs-PrimaryCells"> </a></td><td>Primary cells</td></tr><tr><td style="white-space:nowrap">Protein<a name="miabis-detailed-samply-type-cs-Protein"> </a></td><td>Protein</td></tr><tr><td style="white-space:nowrap">RedBloodCells<a name="miabis-detailed-samply-type-cs-RedBloodCells"> </a></td><td>Red blood cells</td></tr><tr><td style="white-space:nowrap">RNA<a name="miabis-detailed-samply-type-cs-RNA"> </a></td><td>RNA</td></tr><tr><td style="white-space:nowrap">Saliva<a name="miabis-detailed-samply-type-cs-Saliva"> </a></td><td>Saliva</td></tr><tr><td style="white-space:nowrap">Semen<a name="miabis-detailed-samply-type-cs-Semen"> </a></td><td>Semen</td></tr><tr><td style="white-space:nowrap">Serum<a name="miabis-detailed-samply-type-cs-Serum"> </a></td><td>Serum</td></tr><tr><td style="white-space:nowrap">SpecimenEnvironment<a name="miabis-detailed-samply-type-cs-SpecimenEnvironment"> </a></td><td>Specimen from environment</td></tr><tr><td style="white-space:nowrap">Sputum<a name="miabis-detailed-samply-type-cs-Sputum"> </a></td><td>Sputum</td></tr><tr><td style="white-space:nowrap">StemCells<a name="miabis-detailed-samply-type-cs-StemCells"> </a></td><td>Stem cells and iPS cells</td></tr><tr><td style="white-space:nowrap">Swab<a name="miabis-detailed-samply-type-cs-Swab"> </a></td><td>Swab</td></tr><tr><td style="white-space:nowrap">Sweat<a name="miabis-detailed-samply-type-cs-Sweat"> </a></td><td>Sweat</td></tr><tr><td style="white-space:nowrap">SynovialFluid<a name="miabis-detailed-samply-type-cs-SynovialFluid"> </a></td><td>Synovial fluid</td></tr><tr><td style="white-space:nowrap">Tears<a name="miabis-detailed-samply-type-cs-Tears"> </a></td><td>Tears</td></tr><tr><td style="white-space:nowrap">Teeth<a name="miabis-detailed-samply-type-cs-Teeth"> </a></td><td>Teeth</td></tr><tr><td style="white-space:nowrap">TissueFixed<a name="miabis-detailed-samply-type-cs-TissueFixed"> </a></td><td>Tissue (fixed)</td></tr><tr><td style="white-space:nowrap">TissueFreshFrozen<a name="miabis-detailed-samply-type-cs-TissueFreshFrozen"> </a></td><td>Tissue (fresh frozen)</td></tr><tr><td style="white-space:nowrap">UmbilicalCord<a name="miabis-detailed-samply-type-cs-UmbilicalCord"> </a></td><td>Umbilical cord</td></tr><tr><td style="white-space:nowrap">Urine<a name="miabis-detailed-samply-type-cs-Urine"> </a></td><td>Urine</td></tr><tr><td style="white-space:nowrap">UrineSediment<a name="miabis-detailed-samply-type-cs-UrineSediment"> </a></td><td>Urine sediment</td></tr><tr><td style="white-space:nowrap">VitreousFluid<a name="miabis-detailed-samply-type-cs-VitreousFluid"> </a></td><td>Vitreous fluid</td></tr><tr><td style="white-space:nowrap">WholeBlood<a name="miabis-detailed-samply-type-cs-WholeBlood"> </a></td><td>Whole blood</td></tr><tr><td style="white-space:nowrap">WholeBloodDried<a name="miabis-detailed-samply-type-cs-WholeBloodDried"> </a></td><td>Whole blood dried(eg. Guthrie card)</td></tr></table></div>
</text>
<url
value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs"/>
<version value="1.0.0"/>
<name value="DetailedSampleTypeCS"/>
<title value="DetailedSampleType"/>
<status value="active"/>
<date value="2025-05-15T13:14:34+00:00"/>
<publisher value="BBMRI-ERIC"/>
<contact>
<name value="BBMRI-ERIC"/>
<telecom>
<system value="url"/>
<value value="http://bbmri-eric.eu"/>
</telecom>
<telecom>
<system value="email"/>
<value value="contact@bbmri-eric.eu"/>
</telecom>
</contact>
<contact>
<name value="Radovan Tomasik"/>
<telecom>
<system value="email"/>
<value value="radovan.tomasik@bbmri-eric.eu"/>
<use value="work"/>
</telecom>
</contact>
<description value="Code system for the detailed sample type of a sample"/>
<content value="complete"/>
<count value="64"/>
<concept>
<code value="AmnioticFluid"/>
<display value="Amniotic fluid"/>
</concept>
<concept>
<code value="AscitesFluid"/>
<display value="Ascites Fluid"/>
</concept>
<concept>
<code value="Bile"/>
<display value="Bile"/>
</concept>
<concept>
<code value="BodyCavityFluid"/>
<display value="Body cavity fluid"/>
</concept>
<concept>
<code value="Bone"/>
<display value="Bone"/>
</concept>
<concept>
<code value="BoneMarrowAspirate"/>
<display value="Bone marrow aspirate"/>
</concept>
<concept>
<code value="BoneMarrowPlasma"/>
<display value="Bone marrow plasma"/>
</concept>
<concept>
<code value="BoneMarrowWhole"/>
<display value="Bone marrow whole"/>
</concept>
<concept>
<code value="BreastMilk"/>
<display value="Breast milk"/>
</concept>
<concept>
<code value="BronchLavage"/>
<display value="Bronchoalveolar lavage"/>
</concept>
<concept>
<code value="BuffyCoat"/>
<display value="Buffy coat"/>
</concept>
<concept>
<code value="CancerCellLine"/>
<display value="Cancer cell lines"/>
</concept>
<concept>
<code value="CerebrospinalFluid"/>
<display value="Cerebrospinal fluid"/>
</concept>
<concept>
<code value="CordBlood"/>
<display value="Cord blood"/>
</concept>
<concept>
<code value="DentalPulp"/>
<display value="Dental pulp"/>
</concept>
<concept>
<code value="DNA"/>
<display value="DNA"/>
</concept>
<concept>
<code value="Embryo"/>
<display value="Embryo"/>
</concept>
<concept>
<code value="EntireOrgan"/>
<display value="Entire body Organ"/>
</concept>
<concept>
<code value="Faeces"/>
<display value="Faeces"/>
</concept>
<concept>
<code value="FetalTissue"/>
<display value="Fetal tissue"/>
</concept>
<concept>
<code value="Fibroblast"/>
<display value="Fibroblast"/>
</concept>
<concept>
<code value="FoodSpecimen"/>
<display value="Food specimen"/>
</concept>
<concept>
<code value="Gas"/>
<display value="Gas exhaled (breath)"/>
</concept>
<concept>
<code value="GastricFluid"/>
<display value="Gastric fluid"/>
</concept>
<concept>
<code value="Hair"/>
<display value="Hair"/>
</concept>
<concept>
<code value="ImmortalizedCellLine"/>
<display value="Immortalized cell line"/>
</concept>
<concept>
<code value="IsolatedMicrobe"/>
<display value="Isolated microbes"/>
</concept>
<concept>
<code value="IsolatedExosome"/>
<display value="Isolated or encriched exosomes"/>
</concept>
<concept>
<code value="IsolatedTumorCell"/>
<display value="Isolated tumor cells(neoplastic cells)"/>
</concept>
<concept>
<code value="LiquidBiopsy"/>
<display value="Liquid biopsy"/>
</concept>
<concept>
<code value="MenstrualBlood"/>
<display value="Menstrual blood"/>
</concept>
<concept>
<code value="Nail"/>
<display value="Nail"/>
</concept>
<concept>
<code value="NasalWashing"/>
<display value="Nasal washing"/>
</concept>
<concept>
<code value="Organoid"/>
<display value="Organoids"/>
</concept>
<concept>
<code value="Other"/>
<display value="Other"/>
</concept>
<concept>
<code value="PericardialFluid"/>
<display value="Pericardial fluid"/>
</concept>
<concept>
<code value="PBMC"/>
<display value="Peripheral blood mononuclear cells"/>
</concept>
<concept>
<code value="Placenta"/>
<display value="Placenta"/>
</concept>
<concept>
<code value="Plasma"/>
<display value="Plasma"/>
</concept>
<concept>
<code value="PleuralFluid"/>
<display value="Pleural fluid"/>
</concept>
<concept>
<code value="PostMortemTissue"/>
<display value="Post-mortem tissue"/>
</concept>
<concept>
<code value="PrimaryCells"/>
<display value="Primary cells"/>
</concept>
<concept>
<code value="Protein"/>
<display value="Protein"/>
</concept>
<concept>
<code value="RedBloodCells"/>
<display value="Red blood cells"/>
</concept>
<concept>
<code value="RNA"/>
<display value="RNA"/>
</concept>
<concept>
<code value="Saliva"/>
<display value="Saliva"/>
</concept>
<concept>
<code value="Semen"/>
<display value="Semen"/>
</concept>
<concept>
<code value="Serum"/>
<display value="Serum"/>
</concept>
<concept>
<code value="SpecimenEnvironment"/>
<display value="Specimen from environment"/>
</concept>
<concept>
<code value="Sputum"/>
<display value="Sputum"/>
</concept>
<concept>
<code value="StemCells"/>
<display value="Stem cells and iPS cells"/>
</concept>
<concept>
<code value="Swab"/>
<display value="Swab"/>
</concept>
<concept>
<code value="Sweat"/>
<display value="Sweat"/>
</concept>
<concept>
<code value="SynovialFluid"/>
<display value="Synovial fluid"/>
</concept>
<concept>
<code value="Tears"/>
<display value="Tears"/>
</concept>
<concept>
<code value="Teeth"/>
<display value="Teeth"/>
</concept>
<concept>
<code value="TissueFixed"/>
<display value="Tissue (fixed)"/>
</concept>
<concept>
<code value="TissueFreshFrozen"/>
<display value="Tissue (fresh frozen)"/>
</concept>
<concept>
<code value="UmbilicalCord"/>
<display value="Umbilical cord"/>
</concept>
<concept>
<code value="Urine"/>
<display value="Urine"/>
</concept>
<concept>
<code value="UrineSediment"/>
<display value="Urine sediment"/>
</concept>
<concept>
<code value="VitreousFluid"/>
<display value="Vitreous fluid"/>
</concept>
<concept>
<code value="WholeBlood"/>
<display value="Whole blood"/>
</concept>
<concept>
<code value="WholeBloodDried"/>
<display value="Whole blood dried(eg. Guthrie card)"/>
</concept>
</CodeSystem>
IG © 2024+ BBMRI-ERIC. Package fhir.example#1.0.0 based on FHIR 4.0.1. Generated 2025-05-15
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