MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

MIABIS on FHIR Implementation Guide - Local Development build (v1.3.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: CollectionInstance - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Group/example-collection-group> a fhir:Group ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "example-collection-group"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection" ;
       fhir:index 0 ;
       fhir:link <https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Group example-collection-group</b></p><a name=\"example-collection-group\"> </a><a name=\"hcexample-collection-group\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-miabis-collection.html\">Collection</a></p></div><p><b>Number Of Subjects</b>: 100</p><p><b>Inclusion Criteria Extension</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs HealthStatus}\">Health status</span></p><p><b>Member Entity</b>: <a href=\"Specimen-example.html\">Specimen: extension = https://directory.bbmri-eric.eu/#bbmri:exampleID; identifier = sampleId; type = Buffy coat; note = This is a restriction of sample usage</a></p><p><b>identifier</b>: collectionId</p><p><b>active</b>: true</p><p><b>type</b>: Person</p><p><b>actual</b>: true</p><p><b>name</b>: CollectionName</p><p><b>managingEntity</b>: <a href=\"Organization-example-biobank.html\">Organization biobankName</a></p><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Age}\">Age range</span></p><p><b>value</b>: 18-65 years</p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Sex}\">Sex</span></p><p><b>value</b>: <span title=\"Codes:{http://hl7.org/fhir/administrative-gender female}\">Female</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS StorageTemperature}\">Storage temperature</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}\">Room temperature</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS MaterialType}\">Material type</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs RNA}\">RNA</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Diagnosis}\">Diagnosis</span></p><p><b>value</b>: <span title=\"Codes:{http://hl7.org/fhir/sid/icd-10 C50}\">Malignant neoplasm of breast</span></p><p><b>exclude</b>: false</p></blockquote></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension" ] ;
     fhir:Extension.valueInteger [ fhir:value "100"^^xsd:integer ]
  ], [
     fhir:index 1 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs" ] ;
         fhir:Coding.code [ fhir:value "HealthStatus" ]
       ]
     ]
  ], [
     fhir:index 2 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-member-entity-extension" ] ;
     fhir:Extension.valueReference [
       fhir:link <http://hl7.org/fhir/Specimen/example> ;
       fhir:Reference.reference [ fhir:value "Specimen/example" ]
     ]
  ] ;
  fhir:Group.identifier [
     fhir:index 0 ;
     fhir:Identifier.value [ fhir:value "collectionId" ]
  ] ;
  fhir:Group.active [ fhir:value "true"^^xsd:boolean] ;
  fhir:Group.type [ fhir:value "person"] ;
  fhir:Group.actual [ fhir:value "true"^^xsd:boolean] ;
  fhir:Group.name [ fhir:value "CollectionName"] ;
  fhir:Group.managingEntity [
     fhir:link <http://hl7.org/fhir/Organization/example-biobank> ;
     fhir:Reference.reference [ fhir:value "Organization/example-biobank" ]
  ] ;
  fhir:Group.characteristic [
     fhir:index 0 ;
     fhir:Group.characteristic.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS" ] ;
         fhir:Coding.code [ fhir:value "Age" ]
       ]
     ] ;
     fhir:Group.characteristic.valueRange [
       fhir:Range.low [
         fhir:Quantity.value [ fhir:value "18"^^xsd:decimal ] ;
         fhir:Quantity.unit [ fhir:value "years" ]
       ] ;
       fhir:Range.high [
         fhir:Quantity.value [ fhir:value "65"^^xsd:decimal ] ;
         fhir:Quantity.unit [ fhir:value "years" ]
       ]
     ] ;
     fhir:Group.characteristic.exclude [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 1 ;
     fhir:Group.characteristic.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS" ] ;
         fhir:Coding.code [ fhir:value "Sex" ]
       ]
     ] ;
     fhir:Group.characteristic.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/administrative-gender" ] ;
         fhir:Coding.code [ fhir:value "female" ]
       ]
     ] ;
     fhir:Group.characteristic.exclude [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 2 ;
     fhir:Group.characteristic.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS" ] ;
         fhir:Coding.code [ fhir:value "StorageTemperature" ]
       ]
     ] ;
     fhir:Group.characteristic.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs" ] ;
         fhir:Coding.code [ fhir:value "RT" ]
       ]
     ] ;
     fhir:Group.characteristic.exclude [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 3 ;
     fhir:Group.characteristic.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS" ] ;
         fhir:Coding.code [ fhir:value "MaterialType" ]
       ]
     ] ;
     fhir:Group.characteristic.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs" ] ;
         fhir:Coding.code [ fhir:value "RNA" ]
       ]
     ] ;
     fhir:Group.characteristic.exclude [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 4 ;
     fhir:Group.characteristic.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS" ] ;
         fhir:Coding.code [ fhir:value "Diagnosis" ]
       ]
     ] ;
     fhir:Group.characteristic.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/sid/icd-10" ] ;
         fhir:Coding.code [ fhir:value "C50" ]
       ]
     ] ;
     fhir:Group.characteristic.exclude [ fhir:value "false"^^xsd:boolean ]
  ] .

<http://hl7.org/fhir/Specimen/example> a fhir:Specimen .

<http://hl7.org/fhir/Organization/example-biobank> a fhir:Organization .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Group/example-collection-group.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Group/example-collection-group.ttl> .