MIABIS on FHIR Implementation Guide
1.0.0 - CI Build

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: CollectionInstance - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Group ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-collection-group"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection"^^xsd:anyURI ;
fhir:link <https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Group example-collection-group</b></p><a name=\"example-collection-group\"> </a><a name=\"hcexample-collection-group\"> </a><a name=\"example-collection-group-en-US\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-miabis-collection.html\">Collection</a></p></div><p><b>Number Of Subjects</b>: 100</p><p><b>Inclusion Criteria Extension</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs HealthStatus}\">Health status</span></p><p><b>Extension Definition for Group.member.entity for Version 5.0</b>: <a href=\"Specimen-example.html\">Specimen: extension = https://directory.bbmri-eric.eu/#bbmri:exampleID; identifier = sampleId; type = Buffy coat; note = This is a restriction of sample usage</a></p><p><b>identifier</b>: collectionId</p><p><b>active</b>: true</p><p><b>type</b>: Person</p><p><b>actual</b>: true</p><p><b>name</b>: CollectionName</p><p><b>managingEntity</b>: <a href=\"Organization-example-biobank.html\">Organization biobankName</a></p><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Age}\">Age range</span></p><p><b>value</b>: 18-65 years</p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Sex}\">Sex</span></p><p><b>value</b>: <span title=\"Codes:{http://hl7.org/fhir/administrative-gender female}\">Female</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS StorageTemperature}\">Storage temperature</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}\">Room temperature</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS MaterialType}\">Material type</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs RNA}\">RNA</span></p><p><b>exclude</b>: false</p></blockquote><blockquote><p><b>characteristic</b></p><p><b>code</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Diagnosis}\">Diagnosis</span></p><p><b>value</b>: <span title=\"Codes:{http://hl7.org/fhir/sid/icd-10 C50}\">Malignant neoplasm of breast</span></p><p><b>exclude</b>: false</p></blockquote></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 100     ]
  ] [
fhir:url [ fhir:v "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs"^^xsd:anyURI ] ;
fhir:code [ fhir:v "HealthStatus" ]       ] )     ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/5.0/StructureDefinition/extension-Group.member.entity"^^xsd:anyURI ] ;
fhir:value [
a fhir:Reference ;
fhir:reference [ fhir:v "Specimen/example" ]     ]
  ] ) ; # 
  fhir:identifier ( [
fhir:value [ fhir:v "collectionId" ]
  ] ) ; # 
  fhir:active [ fhir:v true] ; # 
  fhir:type [ fhir:v "person"] ; # 
  fhir:actual [ fhir:v true] ; # 
  fhir:name [ fhir:v "CollectionName"] ; # 
  fhir:managingEntity [
fhir:reference [ fhir:v "Organization/example-biobank" ]
  ] ; # 
  fhir:characteristic ( [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "Age" ]       ] )     ] ;
fhir:value [
a fhir:Range ;
fhir:low [
fhir:value [ fhir:v "18"^^xsd:decimal ] ;
fhir:unit [ fhir:v "years" ]       ] ;
fhir:high [
fhir:value [ fhir:v "65"^^xsd:decimal ] ;
fhir:unit [ fhir:v "years" ]       ]     ] ;
fhir:exclude [ fhir:v false ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "Sex" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/administrative-gender"^^xsd:anyURI ] ;
fhir:code [ fhir:v "female" ]       ] )     ] ;
fhir:exclude [ fhir:v false ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "StorageTemperature" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"^^xsd:anyURI ] ;
fhir:code [ fhir:v "RT" ]       ] )     ] ;
fhir:exclude [ fhir:v false ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "MaterialType" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs"^^xsd:anyURI ] ;
fhir:code [ fhir:v "RNA" ]       ] )     ] ;
fhir:exclude [ fhir:v false ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "Diagnosis" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/sid/icd-10"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C50" ]       ] )     ] ;
fhir:exclude [ fhir:v false ]
  ] ) . #