MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

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: CollectionInstance - XML Representation

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<Group xmlns="http://hl7.org/fhir">
  <id value="example-collection-group"/>
  <meta>
    <profile
             value="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Group example-collection-group</b></p><a name="example-collection-group"> </a><a name="hcexample-collection-group"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-miabis-collection.html">Collection</a></p></div><p style="border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;">CollectionName (Person, enumerated) (collectionId)</p><hr/><table class="grid"><tr><td style="background-color: #f3f5da" title="Record is active">Active:</td><td>true</td><td style="background-color: #f3f5da" title="The kind of things that are members of the group">Type:</td><td>Person</td></tr><tr><td style="background-color: #f3f5da" title="Whether the members are listed (enumerated), or the group is a definition of what could be a member (definitional)">Membership:</td><td colspan="3">enumerated</td></tr><tr><td style="background-color: #f3f5da" title="The entity responsible for the group">Managed By:</td><td colspan="3"><a href="Organization-example-biobank.html">biobankName (http://www.bbmri-eric.eu/#biobankId)</a></td></tr><tr><td style="background-color: #f3f5da" title="Reference to an entity that is a member of the group. This extension is used because R4 Group.member.entity does not support all resource types allowed in R5."><a href="StructureDefinition-miabis-member-entity-extension.html">Member Entity</a></td><td colspan="3"><a href="Specimen-example.html">Specimen: extension = https://directory.bbmri-eric.eu/#bbmri:exampleID; identifier = sampleId; type = Buffy coat; note = This is a restriction of sample usage</a></td></tr><tr><td style="background-color: #f3f5da" title="Information on type of parameters that determine which subjects will become collection participants."><a href="StructureDefinition-miabis-inclusion-criteria-extension.html">Inclusion Criteria Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs HealthStatus}">Health status</span></td></tr><tr><td style="background-color: #f3f5da" title="Total number of subjects included in the collection."><a href="StructureDefinition-miabis-number-of-subjects-extension.html">Number Of Subjects</a></td><td colspan="3">100</td></tr></table><p><b>Characteristics</b></p><table class="grid"><tr><th>Characteristic</th><th>Value</th></tr><tr><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Age}">Age range</span></td><td>18-65 years</td></tr><tr><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Sex}">Sex</span></td><td><span title="Codes:{http://hl7.org/fhir/administrative-gender female}">Female</span></td></tr><tr><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS StorageTemperature}">Storage temperature</span></td><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}">Room temperature</span></td></tr><tr><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS MaterialType}">Material type</span></td><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs RNA}">RNA</span></td></tr><tr><td><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Diagnosis}">Diagnosis</span></td><td><span title="Codes:{http://hl7.org/fhir/sid/icd-10 C50}">Malignant neoplasm of breast</span></td></tr></table></div>
  </text>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension">
    <valueInteger value="100"/>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs"/>
        <code value="HealthStatus"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-member-entity-extension">
    <valueReference>🔗 
      <reference value="Specimen/example"/>
    </valueReference>
  </extension>
  <identifier>
    <value value="collectionId"/>
  </identifier>
  <active value="true"/>
  <type value="person"/>
  <actual value="true"/>
  <name value="CollectionName"/>
  <managingEntity>🔗 
    <reference value="Organization/example-biobank"/>
  </managingEntity>
  <characteristic>
    <code>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"/>
        <code value="Age"/>
      </coding>
    </code>
    <valueRange>
      <low>
        <value value="18"/>
        <unit value="years"/>
      </low>
      <high>
        <value value="65"/>
        <unit value="years"/>
      </high>
    </valueRange>
    <exclude value="false"/>
  </characteristic>
  <characteristic>
    <code>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"/>
        <code value="Sex"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://hl7.org/fhir/administrative-gender"/>
        <code value="female"/>
      </coding>
    </valueCodeableConcept>
    <exclude value="false"/>
  </characteristic>
  <characteristic>
    <code>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"/>
        <code value="StorageTemperature"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
        <code value="RT"/>
      </coding>
    </valueCodeableConcept>
    <exclude value="false"/>
  </characteristic>
  <characteristic>
    <code>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"/>
        <code value="MaterialType"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs"/>
        <code value="RNA"/>
      </coding>
    </valueCodeableConcept>
    <exclude value="false"/>
  </characteristic>
  <characteristic>
    <code>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS"/>
        <code value="Diagnosis"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://hl7.org/fhir/sid/icd-10"/>
        <code value="C50"/>
      </coding>
    </valueCodeableConcept>
    <exclude value="false"/>
  </characteristic>
</Group>