MIABIS on FHIR Implementation Guide
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: CollectionInstance - JSON Representation

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{
  "resourceType" : "Group",
  "id" : "example-collection-group",
  "meta" : {
    "profile" : [
      🔗 "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Group example-collection-group</b></p><a name=\"example-collection-group\"> </a><a name=\"hcexample-collection-group\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-miabis-collection.html\">Collection</a></p></div><p style=\"border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;\">CollectionName (Person, enumerated) (collectionId)</p><hr/><table class=\"grid\"><tr><td style=\"background-color: #f3f5da\" title=\"Record is active\">Active:</td><td>true</td><td style=\"background-color: #f3f5da\" title=\"The kind of things that are members of the group\">Type:</td><td>Person</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Whether the members are listed (enumerated), or the group is a definition of what could be a member (definitional)\">Membership:</td><td colspan=\"3\">enumerated</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The entity responsible for the group\">Managed By:</td><td colspan=\"3\"><a href=\"Organization-example-biobank.html\">biobankName (http://www.bbmri-eric.eu/#biobankId)</a></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Reference to an entity that is a member of the group. This extension is used because R4 Group.member.entity does not support all resource types allowed in R5.\"><a href=\"StructureDefinition-miabis-member-entity-extension.html\">Member Entity</a></td><td colspan=\"3\"><a href=\"Specimen-example.html\">Specimen: extension = https://directory.bbmri-eric.eu/#bbmri:exampleID; identifier = sampleId; type = Buffy coat; note = This is a restriction of sample usage</a></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Information on type of parameters that determine which subjects will become collection participants.\"><a href=\"StructureDefinition-miabis-inclusion-criteria-extension.html\">Inclusion Criteria Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs HealthStatus}\">Health status</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Total number of subjects included in the collection.\"><a href=\"StructureDefinition-miabis-number-of-subjects-extension.html\">Number Of Subjects</a></td><td colspan=\"3\">100</td></tr></table><p><b>Characteristics</b></p><table class=\"grid\"><tr><th>Characteristic</th><th>Value</th></tr><tr><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Age}\">Age range</span></td><td>18-65 years</td></tr><tr><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Sex}\">Sex</span></td><td><span title=\"Codes:{http://hl7.org/fhir/administrative-gender female}\">Female</span></td></tr><tr><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS StorageTemperature}\">Storage temperature</span></td><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}\">Room temperature</span></td></tr><tr><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS MaterialType}\">Material type</span></td><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs RNA}\">RNA</span></td></tr><tr><td><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS Diagnosis}\">Diagnosis</span></td><td><span title=\"Codes:{http://hl7.org/fhir/sid/icd-10 C50}\">Malignant neoplasm of breast</span></td></tr></table></div>"
  },
  "extension" : [
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension",
      "valueInteger" : 100
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-inclusion-criteria-cs",
            "code" : "HealthStatus"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-member-entity-extension",
      "valueReference" : {
        🔗 "reference" : "Specimen/example"
      }
    }
  ],
  "identifier" : [
    {
      "value" : "collectionId"
    }
  ],
  "active" : true,
  "type" : "person",
  "actual" : true,
  "name" : "CollectionName",
  "managingEntity" : {
    🔗 "reference" : "Organization/example-biobank"
  },
  "characteristic" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS",
            "code" : "Age"
          }
        ]
      },
      "valueRange" : {
        "low" : {
          "value" : 18,
          "unit" : "years"
        },
        "high" : {
          "value" : 65,
          "unit" : "years"
        }
      },
      "exclude" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS",
            "code" : "Sex"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://hl7.org/fhir/administrative-gender",
            "code" : "female"
          }
        ]
      },
      "exclude" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS",
            "code" : "StorageTemperature"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs",
            "code" : "RT"
          }
        ]
      },
      "exclude" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS",
            "code" : "MaterialType"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs",
            "code" : "RNA"
          }
        ]
      },
      "exclude" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS",
            "code" : "Diagnosis"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://hl7.org/fhir/sid/icd-10",
            "code" : "C50"
          }
        ]
      },
      "exclude" : false
    }
  ]
}