MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

MIABIS on FHIR Implementation Guide - Local Development build (v1.3.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: CollectionOrgInstance - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Organization/example-collection> a fhir:Organization ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "example-collection"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-organization" ;
       fhir:index 0 ;
       fhir:link <https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-organization>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Organization example-collection</b></p><a name=\"example-collection\"> </a><a name=\"hcexample-collection\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-miabis-collection-organization.html\">Collection Organization</a></p></div><p style=\"border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;\">collectionOrgName (collectionOrgId)</p><hr/><table class=\"grid\"><tr><td style=\"background-color: #f3f5da\" title=\"Other names this is known by\">Alias:</td><td colspan=\"3\">collectionOrgAlias</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The organization of which this organization forms a part\">Part Of:</td><td colspan=\"3\"><a href=\"Organization-example-biobank.html\">biobankName (http://www.bbmri-eric.eu/#biobankId)</a></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Ways to contact the organization\">Contact Detail</td><td colspan=\"3\"><ul><li><a href=\"http://collectionOrg.com\">http://collectionOrg.com</a></li><li>CZ </li></ul></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Ways to contact the organization\">Contact Detail</td><td colspan=\"3\"><ul><li>contactName contactFamilyName </li><li><a href=\"mailto:contactEmail\">contactEmail</a></li></ul></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The source from which the samples were collected or isolated.\"><a href=\"StructureDefinition-miabis-sample-source-extension.html\">Sample Source Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs Human}\">Human</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Key publications produced using the Sample Collection.\"><a href=\"StructureDefinition-miabis-publications-extension.html\">Publications Extension</a></td><td colspan=\"3\">publicationExample</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The overall design of the collection that explains how the collection was/is built up.\"><a href=\"StructureDefinition-miabis-collection-design-extension.html\">Collection Design Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs CaseControl}\">Case-control</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Description of the collection in English.\"><a href=\"StructureDefinition-miabis-organization-description-extension.html\">Description extension</a></td><td colspan=\"3\">descriptionExample</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens.\"><a href=\"StructureDefinition-miabis-collection-dataset-type-extension.html\">Collection Dataset Type Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS Genomic}\">Genomic dataset</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The context in which the Sample Collection was/is conducted.\"><a href=\"StructureDefinition-miabis-sample-collection-setting-extension.html\">Sample Collection Setting Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs RoutineHealthCare}\">Routine health care setting</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The conditions that may change the availability of the samples/data in the collection.\"><a href=\"StructureDefinition-miabis-use-and-access-conditions-extension.html\">Use and Access Conditions Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs CommercialUse}\">Commercial use</span></td></tr></table></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS" ] ;
         fhir:Coding.code [ fhir:value "Genomic" ]
       ]
     ]
  ], [
     fhir:index 1 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs" ] ;
         fhir:Coding.code [ fhir:value "Human" ]
       ]
     ]
  ], [
     fhir:index 2 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs" ] ;
         fhir:Coding.code [ fhir:value "RoutineHealthCare" ]
       ]
     ]
  ], [
     fhir:index 3 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs" ] ;
         fhir:Coding.code [ fhir:value "CaseControl" ]
       ]
     ]
  ], [
     fhir:index 4 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs" ] ;
         fhir:Coding.code [ fhir:value "CommercialUse" ]
       ]
     ]
  ], [
     fhir:index 5 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension" ] ;
     fhir:Extension.valueString [ fhir:value "publicationExample" ]
  ], [
     fhir:index 6 ;
     fhir:Extension.url [ fhir:value "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension" ] ;
     fhir:Extension.valueString [ fhir:value "descriptionExample" ]
  ] ;
  fhir:Organization.identifier [
     fhir:index 0 ;
     fhir:Identifier.value [ fhir:value "collectionOrgId" ]
  ] ;
  fhir:Organization.name [ fhir:value "collectionOrgName"] ;
  fhir:Organization.alias [
     fhir:value "collectionOrgAlias" ;
     fhir:index 0
  ] ;
  fhir:Organization.telecom [
     fhir:index 0 ;
     fhir:ContactPoint.system [ fhir:value "url" ] ;
     fhir:ContactPoint.value [ fhir:value "http://collectionOrg.com" ]
  ] ;
  fhir:Organization.address [
     fhir:index 0 ;
     fhir:Address.country [ fhir:value "CZ" ]
  ] ;
  fhir:Organization.partOf [
     fhir:link <http://hl7.org/fhir/Organization/example-biobank> ;
     fhir:Reference.reference [ fhir:value "Organization/example-biobank" ]
  ] ;
  fhir:Organization.contact [
     fhir:index 0 ;
     fhir:Organization.contact.name [
       fhir:HumanName.family [ fhir:value "contactFamilyName" ] ;
       fhir:HumanName.given [
         fhir:value "contactName" ;
         fhir:index 0
       ]
     ] ;
     fhir:Organization.contact.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "email" ] ;
       fhir:ContactPoint.value [ fhir:value "contactEmail" ]
     ]
  ] .

<http://hl7.org/fhir/Organization/example-biobank> a fhir:Organization .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Organization/example-collection.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Organization/example-collection.ttl> .