MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

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: CollectionOrgInstance - XML Representation

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<Organization xmlns="http://hl7.org/fhir">
  <id value="example-collection"/>
  <meta>
    <profile
             value="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-organization"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Organization example-collection</b></p><a name="example-collection"> </a><a name="hcexample-collection"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-miabis-collection-organization.html">Collection Organization</a></p></div><p style="border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;">collectionOrgName (collectionOrgId)</p><hr/><table class="grid"><tr><td style="background-color: #f3f5da" title="Other names this is known by">Alias:</td><td colspan="3">collectionOrgAlias</td></tr><tr><td style="background-color: #f3f5da" title="The organization of which this organization forms a part">Part Of:</td><td colspan="3"><a href="Organization-example-biobank.html">biobankName (http://www.bbmri-eric.eu/#biobankId)</a></td></tr><tr><td style="background-color: #f3f5da" title="Ways to contact the organization">Contact Detail</td><td colspan="3"><ul><li><a href="http://collectionOrg.com">http://collectionOrg.com</a></li><li>CZ </li></ul></td></tr><tr><td style="background-color: #f3f5da" title="Ways to contact the organization">Contact Detail</td><td colspan="3"><ul><li>contactName contactFamilyName </li><li><a href="mailto:contactEmail">contactEmail</a></li></ul></td></tr><tr><td style="background-color: #f3f5da" title="The source from which the samples were collected or isolated."><a href="StructureDefinition-miabis-sample-source-extension.html">Sample Source Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs Human}">Human</span></td></tr><tr><td style="background-color: #f3f5da" title="Key publications produced using the Sample Collection."><a href="StructureDefinition-miabis-publications-extension.html">Publications Extension</a></td><td colspan="3">publicationExample</td></tr><tr><td style="background-color: #f3f5da" title="The overall design of the collection that explains how the collection was/is built up."><a href="StructureDefinition-miabis-collection-design-extension.html">Collection Design Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs CaseControl}">Case-control</span></td></tr><tr><td style="background-color: #f3f5da" title="Description of the collection in English."><a href="StructureDefinition-miabis-organization-description-extension.html">Description extension</a></td><td colspan="3">descriptionExample</td></tr><tr><td style="background-color: #f3f5da" title="Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens."><a href="StructureDefinition-miabis-collection-dataset-type-extension.html">Collection Dataset Type Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS Genomic}">Genomic dataset</span></td></tr><tr><td style="background-color: #f3f5da" title="The context in which the Sample Collection was/is conducted."><a href="StructureDefinition-miabis-sample-collection-setting-extension.html">Sample Collection Setting Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs RoutineHealthCare}">Routine health care setting</span></td></tr><tr><td style="background-color: #f3f5da" title="The conditions that may change the availability of the samples/data in the collection."><a href="StructureDefinition-miabis-use-and-access-conditions-extension.html">Use and Access Conditions Extension</a></td><td colspan="3"><span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs CommercialUse}">Commercial use</span></td></tr></table></div>
  </text>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS"/>
        <code value="Genomic"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs"/>
        <code value="Human"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs"/>
        <code value="RoutineHealthCare"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs"/>
        <code value="CaseControl"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs"/>
        <code value="CommercialUse"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension">
    <valueString value="publicationExample"/>
  </extension>
  <extension
             url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension">
    <valueString value="descriptionExample"/>
  </extension>
  <identifier>
    <value value="collectionOrgId"/>
  </identifier>
  <name value="collectionOrgName"/>
  <alias value="collectionOrgAlias"/>
  <telecom>
    <system value="url"/>
    <value value="http://collectionOrg.com"/>
  </telecom>
  <address>
    <country value="CZ"/>
  </address>
  <partOf>🔗 
    <reference value="Organization/example-biobank"/>
  </partOf>
  <contact>
    <name>
      <family value="contactFamilyName"/>
      <given value="contactName"/>
    </name>
    <telecom>
      <system value="email"/>
      <value value="contactEmail"/>
    </telecom>
  </contact>
</Organization>