MIABIS on FHIR Implementation Guide
1.3.0 - CI Build

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: CollectionOrgInstance - JSON Representation

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{
  "resourceType" : "Organization",
  "id" : "example-collection",
  "meta" : {
    "profile" : [
      🔗 "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-organization"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Organization example-collection</b></p><a name=\"example-collection\"> </a><a name=\"hcexample-collection\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-miabis-collection-organization.html\">Collection Organization</a></p></div><p style=\"border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;\">collectionOrgName (collectionOrgId)</p><hr/><table class=\"grid\"><tr><td style=\"background-color: #f3f5da\" title=\"Other names this is known by\">Alias:</td><td colspan=\"3\">collectionOrgAlias</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The organization of which this organization forms a part\">Part Of:</td><td colspan=\"3\"><a href=\"Organization-example-biobank.html\">biobankName (http://www.bbmri-eric.eu/#biobankId)</a></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Ways to contact the organization\">Contact Detail</td><td colspan=\"3\"><ul><li><a href=\"http://collectionOrg.com\">http://collectionOrg.com</a></li><li>CZ </li></ul></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Ways to contact the organization\">Contact Detail</td><td colspan=\"3\"><ul><li>contactName contactFamilyName </li><li><a href=\"mailto:contactEmail\">contactEmail</a></li></ul></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The source from which the samples were collected or isolated.\"><a href=\"StructureDefinition-miabis-sample-source-extension.html\">Sample Source Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs Human}\">Human</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Key publications produced using the Sample Collection.\"><a href=\"StructureDefinition-miabis-publications-extension.html\">Publications Extension</a></td><td colspan=\"3\">publicationExample</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The overall design of the collection that explains how the collection was/is built up.\"><a href=\"StructureDefinition-miabis-collection-design-extension.html\">Collection Design Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs CaseControl}\">Case-control</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Description of the collection in English.\"><a href=\"StructureDefinition-miabis-organization-description-extension.html\">Description extension</a></td><td colspan=\"3\">descriptionExample</td></tr><tr><td style=\"background-color: #f3f5da\" title=\"Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens.\"><a href=\"StructureDefinition-miabis-collection-dataset-type-extension.html\">Collection Dataset Type Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS Genomic}\">Genomic dataset</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The context in which the Sample Collection was/is conducted.\"><a href=\"StructureDefinition-miabis-sample-collection-setting-extension.html\">Sample Collection Setting Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs RoutineHealthCare}\">Routine health care setting</span></td></tr><tr><td style=\"background-color: #f3f5da\" title=\"The conditions that may change the availability of the samples/data in the collection.\"><a href=\"StructureDefinition-miabis-use-and-access-conditions-extension.html\">Use and Access Conditions Extension</a></td><td colspan=\"3\"><span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs CommercialUse}\">Commercial use</span></td></tr></table></div>"
  },
  "extension" : [
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-dataset-typeCS",
            "code" : "Genomic"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-source-cs",
            "code" : "Human"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-sample-collection-setting-cs",
            "code" : "RoutineHealthCare"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-design-cs",
            "code" : "CaseControl"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-use-and-access-conditions-cs",
            "code" : "CommercialUse"
          }
        ]
      }
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension",
      "valueString" : "publicationExample"
    },
    {
      "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension",
      "valueString" : "descriptionExample"
    }
  ],
  "identifier" : [
    {
      "value" : "collectionOrgId"
    }
  ],
  "name" : "collectionOrgName",
  "alias" : [
    "collectionOrgAlias"
  ],
  "telecom" : [
    {
      "system" : "url",
      "value" : "http://collectionOrg.com"
    }
  ],
  "address" : [
    {
      "country" : "CZ"
    }
  ],
  "partOf" : {
    🔗 "reference" : "Organization/example-biobank"
  },
  "contact" : [
    {
      "name" : {
        "family" : "contactFamilyName",
        "given" : [
          "contactName"
        ]
      },
      "telecom" : [
        {
          "system" : "email",
          "value" : "contactEmail"
        }
      ]
    }
  ]
}