MIABIS on FHIR Implementation Guide - Local Development build (v1.0.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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Resource Profile: Collection Organization

Collection Organization represent a formal part of a organization, like ist name, contact information, publications, etc.

Usage:

• Refer to this Resource Profile: Collection
• Examples for this Resource Profile: collectionOrgName

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

• Key Elements Table
• Differential Table
• Snapshot Table
• Statistics/References
• All

Name	Flags	Card.	Type	Description & Constraints
Organization	C	0..*	Organization	A grouping of people or organizations with a common purpose dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management org-1: The organization SHALL at least have a name or an identifier, and possibly more than one
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
identifier	SΣC	1..1	Identifier	ID of the collection. ele-1: All FHIR elements must have a @value or children
active	?!SΣ	0..1	boolean	The state of the collection functions. ele-1: All FHIR elements must have a @value or children
name	SΣC	1..1	string	Name of the collection (preferably in English). ele-1: All FHIR elements must have a @value or children
alias	S	0..1	string	Short name in use for the collection. If applicable. ele-1: All FHIR elements must have a @value or children
telecom	SC	0..1	ContactPoint	Complete http-address for the collection. ele-1: All FHIR elements must have a @value or children org-3: The telecom of an organization can never be of use 'home'
system	ΣC	0..1	code	phone | fax | email | pager | url | sms | other Binding: ContactPointSystem (required): Telecommunications form for contact point. ele-1: All FHIR elements must have a @value or children Required Pattern: url
value	SΣ	0..1	string	URL of the collection. ele-1: All FHIR elements must have a @value or children
use	?!Σ	0..1	code	home | work | temp | old | mobile - purpose of this contact point Binding: ContactPointUse (required): Use of contact point. ele-1: All FHIR elements must have a @value or children
address	SC	1..1	Address	Address of the collection. ele-1: All FHIR elements must have a @value or children org-2: An address of an organization can never be of use 'home'
use	?!Σ	0..1	code	home | work | temp | old | billing - purpose of this address Binding: AddressUse (required): The use of an address. ele-1: All FHIR elements must have a @value or children Example General: home
country	SΣ	1..1	string	Country of the collection. ele-1: All FHIR elements must have a @value or children
partOf	SΣ	1..1	Reference(Biobank)	The organization that the collection is part of. ele-1: All FHIR elements must have a @value or children
contact		0..*	BackboneElement	Contact for the organization for a certain purpose ele-1: All FHIR elements must have a @value or children
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
name		0..1	HumanName	A name associated with the contact ele-1: All FHIR elements must have a @value or children
use	?!Σ	0..1	code	usual | official | temp | nickname | anonymous | old | maiden Binding: NameUse (required): The use of a human name. ele-1: All FHIR elements must have a @value or children
family	SΣ	1..1	string	Family name (often called 'Surname') ele-1: All FHIR elements must have a @value or children
given	SΣ	1..*	string	Given names (not always 'first'). Includes middle names ele-1: All FHIR elements must have a @value or children This repeating element order: Given Names appear in the correct order for presenting the name
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact ele-1: All FHIR elements must have a @value or children
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet / Code	URI
Organization.telecom.system	required	Pattern: url http://hl7.org/fhir/ValueSet/contact-point-system|4.0.1 from the FHIR Standard
Organization.telecom.use	required	ContactPointUse http://hl7.org/fhir/ValueSet/contact-point-use|4.0.1 from the FHIR Standard
Organization.address.use	required	AddressUse http://hl7.org/fhir/ValueSet/address-use|4.0.1 from the FHIR Standard
Organization.contact.name.use	required	NameUse http://hl7.org/fhir/ValueSet/name-use|4.0.1 from the FHIR Standard

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Organization	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Organization	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Organization	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Organization	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Organization	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()
org-1	error	Organization	The organization SHALL at least have a name or an identifier, and possibly more than one : (identifier.count() + name.count()) > 0
org-2	error	Organization.address	An address of an organization can never be of use 'home' : where(use = 'home').empty()
org-3	error	Organization.telecom	The telecom of an organization can never be of use 'home' : where(use = 'home').empty()

This structure is derived from Organization

Name	Flags	Card.	Type	Description & Constraints
Organization		0..*	Organization	A grouping of people or organizations with a common purpose
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required)
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required)
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required)
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required)
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required)
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension
identifier	S	1..1	Identifier	ID of the collection.
active	S	0..1	boolean	The state of the collection functions.
name	S	1..1	string	Name of the collection (preferably in English).
alias	S	0..1	string	Short name in use for the collection. If applicable.
telecom	S	0..1	ContactPoint	Complete http-address for the collection.
system		0..1	code	phone | fax | email | pager | url | sms | other Required Pattern: url
value	S	0..1	string	URL of the collection.
address	S	1..1	Address	Address of the collection.
country	S	1..1	string	Country of the collection.
partOf	S	1..1	Reference(Biobank)	The organization that the collection is part of.
contact
name
family	S	1..1	string	Family name (often called 'Surname')
given	S	1..*	string	Given names (not always 'first'). Includes middle names
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact
Documentation for this format

Name	Flags	Card.	Type	Description & Constraints
Organization	C	0..*	Organization	A grouping of people or organizations with a common purpose org-1: The organization SHALL at least have a name or an identifier, and possibly more than one
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required)
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required)
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required)
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required)
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required)
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SΣC	1..1	Identifier	ID of the collection.
active	?!SΣ	0..1	boolean	The state of the collection functions.
type	Σ	0..*	CodeableConcept	Kind of organization Binding: OrganizationType (example): Used to categorize the organization.
name	SΣC	1..1	string	Name of the collection (preferably in English).
alias	S	0..1	string	Short name in use for the collection. If applicable.
telecom	SC	0..1	ContactPoint	Complete http-address for the collection. org-3: The telecom of an organization can never be of use 'home'
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
system	ΣC	0..1	code	phone | fax | email | pager | url | sms | other Binding: ContactPointSystem (required): Telecommunications form for contact point. Required Pattern: url
value	SΣ	0..1	string	URL of the collection.
use	?!Σ	0..1	code	home | work | temp | old | mobile - purpose of this contact point Binding: ContactPointUse (required): Use of contact point.
rank	Σ	0..1	positiveInt	Specify preferred order of use (1 = highest)
period	Σ	0..1	Period	Time period when the contact point was/is in use
address	SC	1..1	Address	Address of the collection. org-2: An address of an organization can never be of use 'home'
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
use	?!Σ	0..1	code	home | work | temp | old | billing - purpose of this address Binding: AddressUse (required): The use of an address. Example General: home
type	Σ	0..1	code	postal | physical | both Binding: AddressType (required): The type of an address (physical / postal). Example General: both
text	Σ	0..1	string	Text representation of the address Example General: 137 Nowhere Street, Erewhon 9132
line	Σ	0..*	string	Street name, number, direction & P.O. Box etc. This repeating element order: The order in which lines should appear in an address label Example General: 137 Nowhere Street
city	Σ	0..1	string	Name of city, town etc. Example General: Erewhon
district	Σ	0..1	string	District name (aka county) Example General: Madison
state	Σ	0..1	string	Sub-unit of country (abbreviations ok)
postalCode	Σ	0..1	string	Postal code for area Example General: 9132
country	SΣ	1..1	string	Country of the collection.
period	Σ	0..1	Period	Time period when address was/is in use Example General: {"start":"2010-03-23","end":"2010-07-01"}
partOf	SΣ	1..1	Reference(Biobank)	The organization that the collection is part of.
contact		0..*	BackboneElement	Contact for the organization for a certain purpose
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
purpose		0..1	CodeableConcept	The type of contact Binding: ContactEntityType (extensible): The purpose for which you would contact a contact party.
name		0..1	HumanName	A name associated with the contact
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
use	?!Σ	0..1	code	usual | official | temp | nickname | anonymous | old | maiden Binding: NameUse (required): The use of a human name.
text	Σ	0..1	string	Text representation of the full name
family	SΣ	1..1	string	Family name (often called 'Surname')
given	SΣ	1..*	string	Given names (not always 'first'). Includes middle names This repeating element order: Given Names appear in the correct order for presenting the name
prefix	Σ	0..*	string	Parts that come before the name This repeating element order: Prefixes appear in the correct order for presenting the name
suffix	Σ	0..*	string	Parts that come after the name This repeating element order: Suffixes appear in the correct order for presenting the name
period	Σ	0..1	Period	Time period when name was/is in use
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact
address		0..1	Address	Visiting or postal addresses for the contact
endpoint		0..*	Reference(Endpoint)	Technical endpoints providing access to services operated for the organization
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet / Code	URI
Organization.language	preferred	CommonLanguages http://hl7.org/fhir/ValueSet/languages from the FHIR Standard Additional Bindings Purpose AllLanguages Max Binding
Organization.type	example	OrganizationType http://hl7.org/fhir/ValueSet/organization-type from the FHIR Standard
Organization.telecom.system	required	Pattern: url http://hl7.org/fhir/ValueSet/contact-point-system|4.0.1 from the FHIR Standard
Organization.telecom.use	required	ContactPointUse http://hl7.org/fhir/ValueSet/contact-point-use|4.0.1 from the FHIR Standard
Organization.address.use	required	AddressUse http://hl7.org/fhir/ValueSet/address-use|4.0.1 from the FHIR Standard
Organization.address.type	required	AddressType http://hl7.org/fhir/ValueSet/address-type|4.0.1 from the FHIR Standard
Organization.contact.purpose	extensible	ContactEntityType http://hl7.org/fhir/ValueSet/contactentity-type from the FHIR Standard
Organization.contact.name.use	required	NameUse http://hl7.org/fhir/ValueSet/name-use|4.0.1 from the FHIR Standard

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Organization	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Organization	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Organization	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Organization	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Organization	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()
org-1	error	Organization	The organization SHALL at least have a name or an identifier, and possibly more than one : (identifier.count() + name.count()) > 0
org-2	error	Organization.address	An address of an organization can never be of use 'home' : where(use = 'home').empty()
org-3	error	Organization.telecom	The telecom of an organization can never be of use 'home' : where(use = 'home').empty()

This structure is derived from Organization

Summary

Mandatory: 7 elements(3 nested mandatory elements)
Must-Support: 18 elements

Structures

This structure refers to these other structures:

• Biobank (https://fhir.bbmri-eric.eu/StructureDefinition/miabis-biobank)

Extensions

This structure refers to these extensions:

• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension

Key Elements View

Name	Flags	Card.	Type	Description & Constraints
Organization	C	0..*	Organization	A grouping of people or organizations with a common purpose dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management org-1: The organization SHALL at least have a name or an identifier, and possibly more than one
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required) ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
identifier	SΣC	1..1	Identifier	ID of the collection. ele-1: All FHIR elements must have a @value or children
active	?!SΣ	0..1	boolean	The state of the collection functions. ele-1: All FHIR elements must have a @value or children
name	SΣC	1..1	string	Name of the collection (preferably in English). ele-1: All FHIR elements must have a @value or children
alias	S	0..1	string	Short name in use for the collection. If applicable. ele-1: All FHIR elements must have a @value or children
telecom	SC	0..1	ContactPoint	Complete http-address for the collection. ele-1: All FHIR elements must have a @value or children org-3: The telecom of an organization can never be of use 'home'
system	ΣC	0..1	code	phone | fax | email | pager | url | sms | other Binding: ContactPointSystem (required): Telecommunications form for contact point. ele-1: All FHIR elements must have a @value or children Required Pattern: url
value	SΣ	0..1	string	URL of the collection. ele-1: All FHIR elements must have a @value or children
use	?!Σ	0..1	code	home | work | temp | old | mobile - purpose of this contact point Binding: ContactPointUse (required): Use of contact point. ele-1: All FHIR elements must have a @value or children
address	SC	1..1	Address	Address of the collection. ele-1: All FHIR elements must have a @value or children org-2: An address of an organization can never be of use 'home'
use	?!Σ	0..1	code	home | work | temp | old | billing - purpose of this address Binding: AddressUse (required): The use of an address. ele-1: All FHIR elements must have a @value or children Example General: home
country	SΣ	1..1	string	Country of the collection. ele-1: All FHIR elements must have a @value or children
partOf	SΣ	1..1	Reference(Biobank)	The organization that the collection is part of. ele-1: All FHIR elements must have a @value or children
contact		0..*	BackboneElement	Contact for the organization for a certain purpose ele-1: All FHIR elements must have a @value or children
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
name		0..1	HumanName	A name associated with the contact ele-1: All FHIR elements must have a @value or children
use	?!Σ	0..1	code	usual | official | temp | nickname | anonymous | old | maiden Binding: NameUse (required): The use of a human name. ele-1: All FHIR elements must have a @value or children
family	SΣ	1..1	string	Family name (often called 'Surname') ele-1: All FHIR elements must have a @value or children
given	SΣ	1..*	string	Given names (not always 'first'). Includes middle names ele-1: All FHIR elements must have a @value or children This repeating element order: Given Names appear in the correct order for presenting the name
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact ele-1: All FHIR elements must have a @value or children
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet / Code	URI
Organization.telecom.system	required	Pattern: url http://hl7.org/fhir/ValueSet/contact-point-system|4.0.1 from the FHIR Standard
Organization.telecom.use	required	ContactPointUse http://hl7.org/fhir/ValueSet/contact-point-use|4.0.1 from the FHIR Standard
Organization.address.use	required	AddressUse http://hl7.org/fhir/ValueSet/address-use|4.0.1 from the FHIR Standard
Organization.contact.name.use	required	NameUse http://hl7.org/fhir/ValueSet/name-use|4.0.1 from the FHIR Standard

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Organization	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Organization	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Organization	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Organization	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Organization	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()
org-1	error	Organization	The organization SHALL at least have a name or an identifier, and possibly more than one : (identifier.count() + name.count()) > 0
org-2	error	Organization.address	An address of an organization can never be of use 'home' : where(use = 'home').empty()
org-3	error	Organization.telecom	The telecom of an organization can never be of use 'home' : where(use = 'home').empty()

Differential View

This structure is derived from Organization

Name	Flags	Card.	Type	Description & Constraints
Organization		0..*	Organization	A grouping of people or organizations with a common purpose
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required)
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required)
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required)
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required)
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required)
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension
identifier	S	1..1	Identifier	ID of the collection.
active	S	0..1	boolean	The state of the collection functions.
name	S	1..1	string	Name of the collection (preferably in English).
alias	S	0..1	string	Short name in use for the collection. If applicable.
telecom	S	0..1	ContactPoint	Complete http-address for the collection.
system		0..1	code	phone | fax | email | pager | url | sms | other Required Pattern: url
value	S	0..1	string	URL of the collection.
address	S	1..1	Address	Address of the collection.
country	S	1..1	string	Country of the collection.
partOf	S	1..1	Reference(Biobank)	The organization that the collection is part of.
contact
name
family	S	1..1	string	Family name (often called 'Surname')
given	S	1..*	string	Given names (not always 'first'). Includes middle names
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact
Documentation for this format

Snapshot View

Name	Flags	Card.	Type	Description & Constraints
Organization	C	0..*	Organization	A grouping of people or organizations with a common purpose org-1: The organization SHALL at least have a name or an identifier, and possibly more than one
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation
contained		0..*	Resource	Contained, inline Resources
Slices for extension		1..*	Extension	Extension Slice: Unordered, Open by value:url
extension:datasetType	S	0..*	CodeableConcept	Types of datasets (groups of related data) obtained or otherwise derived from donors or their specimens. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension Binding: MIABIS Collection Dataset Type (required)
extension:sampleSource	S	0..1	CodeableConcept	The source from which the samples were collected or isolated. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension Binding: Sample Source Value Set (required)
extension:sampleCollectionSetting	S	0..*	CodeableConcept	The context in which the sample collection was/is conducted. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension Binding: Sample Collection Setting Value Set (required)
extension:collectionDesign	S	0..*	CodeableConcept	The overall design of the collection that explains how the collection was/is built up. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension Binding: Collection Design Value Set (required)
extension:useAndAccessConditions	S	0..*	CodeableConcept	The conditions that may change the availability of the samples/data in the collection. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension Binding: Use and Access Conditions Value Set (required)
extension:publications	S	0..*	string	key publications produced in the collection (provide DOI, if possible). URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
extension:description	S	1..1	string	Description of the collection in English. URL: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SΣC	1..1	Identifier	ID of the collection.
active	?!SΣ	0..1	boolean	The state of the collection functions.
type	Σ	0..*	CodeableConcept	Kind of organization Binding: OrganizationType (example): Used to categorize the organization.
name	SΣC	1..1	string	Name of the collection (preferably in English).
alias	S	0..1	string	Short name in use for the collection. If applicable.
telecom	SC	0..1	ContactPoint	Complete http-address for the collection. org-3: The telecom of an organization can never be of use 'home'
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
system	ΣC	0..1	code	phone | fax | email | pager | url | sms | other Binding: ContactPointSystem (required): Telecommunications form for contact point. Required Pattern: url
value	SΣ	0..1	string	URL of the collection.
use	?!Σ	0..1	code	home | work | temp | old | mobile - purpose of this contact point Binding: ContactPointUse (required): Use of contact point.
rank	Σ	0..1	positiveInt	Specify preferred order of use (1 = highest)
period	Σ	0..1	Period	Time period when the contact point was/is in use
address	SC	1..1	Address	Address of the collection. org-2: An address of an organization can never be of use 'home'
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
use	?!Σ	0..1	code	home | work | temp | old | billing - purpose of this address Binding: AddressUse (required): The use of an address. Example General: home
type	Σ	0..1	code	postal | physical | both Binding: AddressType (required): The type of an address (physical / postal). Example General: both
text	Σ	0..1	string	Text representation of the address Example General: 137 Nowhere Street, Erewhon 9132
line	Σ	0..*	string	Street name, number, direction & P.O. Box etc. This repeating element order: The order in which lines should appear in an address label Example General: 137 Nowhere Street
city	Σ	0..1	string	Name of city, town etc. Example General: Erewhon
district	Σ	0..1	string	District name (aka county) Example General: Madison
state	Σ	0..1	string	Sub-unit of country (abbreviations ok)
postalCode	Σ	0..1	string	Postal code for area Example General: 9132
country	SΣ	1..1	string	Country of the collection.
period	Σ	0..1	Period	Time period when address was/is in use Example General: {"start":"2010-03-23","end":"2010-07-01"}
partOf	SΣ	1..1	Reference(Biobank)	The organization that the collection is part of.
contact		0..*	BackboneElement	Contact for the organization for a certain purpose
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
purpose		0..1	CodeableConcept	The type of contact Binding: ContactEntityType (extensible): The purpose for which you would contact a contact party.
name		0..1	HumanName	A name associated with the contact
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
use	?!Σ	0..1	code	usual | official | temp | nickname | anonymous | old | maiden Binding: NameUse (required): The use of a human name.
text	Σ	0..1	string	Text representation of the full name
family	SΣ	1..1	string	Family name (often called 'Surname')
given	SΣ	1..*	string	Given names (not always 'first'). Includes middle names This repeating element order: Given Names appear in the correct order for presenting the name
prefix	Σ	0..*	string	Parts that come before the name This repeating element order: Prefixes appear in the correct order for presenting the name
suffix	Σ	0..*	string	Parts that come after the name This repeating element order: Suffixes appear in the correct order for presenting the name
period	Σ	0..1	Period	Time period when name was/is in use
telecom		1..*	ContactPoint	Contact details (telephone, email, etc.) for a contact
address		0..1	Address	Visiting or postal addresses for the contact
endpoint		0..*	Reference(Endpoint)	Technical endpoints providing access to services operated for the organization
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet / Code	URI
Organization.language	preferred	CommonLanguages http://hl7.org/fhir/ValueSet/languages from the FHIR Standard Additional Bindings Purpose AllLanguages Max Binding
Organization.type	example	OrganizationType http://hl7.org/fhir/ValueSet/organization-type from the FHIR Standard
Organization.telecom.system	required	Pattern: url http://hl7.org/fhir/ValueSet/contact-point-system|4.0.1 from the FHIR Standard
Organization.telecom.use	required	ContactPointUse http://hl7.org/fhir/ValueSet/contact-point-use|4.0.1 from the FHIR Standard
Organization.address.use	required	AddressUse http://hl7.org/fhir/ValueSet/address-use|4.0.1 from the FHIR Standard
Organization.address.type	required	AddressType http://hl7.org/fhir/ValueSet/address-type|4.0.1 from the FHIR Standard
Organization.contact.purpose	extensible	ContactEntityType http://hl7.org/fhir/ValueSet/contactentity-type from the FHIR Standard
Organization.contact.name.use	required	NameUse http://hl7.org/fhir/ValueSet/name-use|4.0.1 from the FHIR Standard

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Organization	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Organization	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Organization	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Organization	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Organization	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()
org-1	error	Organization	The organization SHALL at least have a name or an identifier, and possibly more than one : (identifier.count() + name.count()) > 0
org-2	error	Organization.address	An address of an organization can never be of use 'home' : where(use = 'home').empty()
org-3	error	Organization.telecom	The telecom of an organization can never be of use 'home' : where(use = 'home').empty()

This structure is derived from Organization

Summary

Mandatory: 7 elements(3 nested mandatory elements)
Must-Support: 18 elements

Structures

This structure refers to these other structures:

• Biobank (https://fhir.bbmri-eric.eu/StructureDefinition/miabis-biobank)

Extensions

This structure refers to these extensions:

• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-dataset-type-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-source-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-collection-setting-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-design-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-use-and-access-conditions-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-publications-extension
• https://fhir.bbmri-eric.eu/StructureDefinition/miabis-organization-description-extension

Other representations of profile: CSV, Excel, Schematron